RetrogeneDB ID: | retro_btau_642 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:25739193..25739650(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC35E3 | ||
Ensembl ID: | ENSBTAG00000031919 | ||
Aliases: | None | ||
Description: | Solute carrier family 35 member E3 [Source:UniProtKB/Swiss-Prot;Acc:A4IFK2] |
Percent Identity: | 52.2 % |
Parental protein coverage: | 50.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PVIIVIQTLCYKKTFSTKIRLTLIPITLGVILNSYYDVKFNFLGTVFAAL-GVLVTS-LYQVWVGAKQHE |
PV...IQT.C.KK.F......T.....LG.I.NS..DVKFN....VFAAL.G.L..S.LY.V..GA..H. | |
Retrocopy | PVAVTIQTICHKKQFTGVLNSTQLLEILGAISNSF-DVKFNDF--VFAAL<GCLAAS<LYPVCTGAQRHG |
Parental | LQVNSMQLLYYQAPMSSAMLLVAVPFFEPVFAEGGIFGPWSVSALLMVLLSGVIAFMVNLSIYWIIGNTS |
L.VN...L..YQA..SSA.L.V.VPFFE.......I.G.W.VSALLM.LLSG.....V..SIYWI.G.TS | |
Retrocopy | LGVNTSYLQCYQALVSSAVLVVVVPFFESACGTQ-IYGLWLVSALLMMLLSGIRVVRVDFSIYWISGYTS |
Parental | PVTYNMFGHFKFCITLFGG |
.VT...FGHFKF....F.G | |
Retrocopy | TVTHDIFGHFKF*LASFEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 43 .76 RPM |
ERP005899_muscle | 0 .00 RPM | 16 .00 RPM |
SRP017611_brain | 0 .00 RPM | 26 .13 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .66 RPM |
SRP017611_liver | 0 .00 RPM | 25 .97 RPM |
SRP030211_testis | 0 .00 RPM | 13 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_513 |
Pan troglodytes | retro_ptro_383 |
Gorilla gorilla | retro_ggor_473 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000031919 | 1 retrocopy |
retro_btau_642 ,
|
Choloepus hoffmanni | ENSCHOG00000013347 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000004322 | 3 retrocopies | |
Homo sapiens | ENSG00000175782 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012605 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060181 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005201 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000002545 | 1 retrocopy |