RetrogeneDB ID: | retro_btau_855 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:11371452..11372469(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | C10ORF26 | ||
Ensembl ID: | ENSBTAG00000014336 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.74 % |
Parental protein coverage: | 97.69 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | RDKETCVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHE |
.DKETC.GTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKH.LQ..QRQH. | |
Retrocopy | QDKETCMGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHHLQS*QRQHD |
Parental | INLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQQQQQQLPAQCGSAGSSPP |
INLIAY.EAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPP.YSAF...........PAQCGSAGSSPP | |
Retrocopy | INLIAYGEAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPAYSAFXXXXXXXXXXXPAQCGSAGSSPP |
Parental | GTDPTRGSQGAQSSPLSGPSRSSTRPPSVTDPEPSDMPADPAATKTSGMEPGGSVAGLGEVDPTAFLDKD |
GTDPTR.SQGAQSSPLSGPSRSSTR.PSVTDPEPSD.PADPAATKTSGMEP.GSVAGLGEVDPTAFLDKD | |
Retrocopy | GTDPTRDSQGAQSSPLSGPSRSSTRLPSVTDPEPSDVPADPAATKTSGMEPSGSVAGLGEVDPTAFLDKD |
Parental | SECKEELLKEYSSEQGSALPDNKDKTPGRHRRFTGDSGIEVCVCNRGHHDDDLKEFNALIDDALDGPLDF |
SECKEELLKEYSSEQGSALPDNKDKTPGRHRRFTGDSGIEVCVCNRGHHDDDL.EFNALI.DALDGPL.F | |
Retrocopy | SECKEELLKEYSSEQGSALPDNKDKTPGRHRRFTGDSGIEVCVCNRGHHDDDLIEFNALIYDALDGPLNF |
Parental | CDSCNVRPPGDEEEGLCQPSEEQAREPGHPHLPRPPACLLLNTINEQDSPNSQSSSSPS |
CDSCNVRPPGD.EEGLC.PSEEQAREPGHPHLPRPPACLLLNTINEQDSPNSQSSSSPS | |
Retrocopy | CDSCNVRPPGD*EEGLC*PSEEQAREPGHPHLPRPPACLLLNTINEQDSPNSQSSSSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .59 RPM |
ERP005899_muscle | 0 .16 RPM | 11 .14 RPM |
SRP017611_brain | 0 .27 RPM | 6 .85 RPM |
SRP017611_kidney | 0 .24 RPM | 14 .58 RPM |
SRP017611_liver | 0 .08 RPM | 9 .82 RPM |
SRP030211_testis | 0 .01 RPM | 8 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014336 | 1 retrocopy |
retro_btau_855 ,
|
Choloepus hoffmanni | ENSCHOG00000007532 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018079 | 1 retrocopy | |
Homo sapiens | ENSG00000166272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002610 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005555 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012618 | 2 retrocopies |