RetrogeneDB ID: | retro_hsap_3774 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:107268922..107269733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250474 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WBP1L | ||
Ensembl ID: | ENSG00000166272 | ||
Aliases: | WBP1L, C10orf26, OPA1L, OPAL1 | ||
Description: | WW domain binding protein 1-like [Source:HGNC Symbol;Acc:23510] |
Percent Identity: | 75.54 % |
Parental protein coverage: | 74.66 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | RLLGGMALLLLQALPSPLSARAEPPQDKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIII |
R.LGG..LLLL.ALPSPLS.RAEPPQDKEA.V.TNNQSYICDTGHCCGQSQCCNY..ELW..WLVWTIII | |
Retrocopy | RFLGGTVLLLLPALPSPLSVRAEPPQDKEA*VHTNNQSYICDTGHCCGQSQCCNYC*ELW*LWLVWTIII |
Parental | ILSCCCVCHHRRAKHRLQAQQRQHEINLIAYREAHNYSALPFYFRFLPNYL-LPPYEEVVNRPPTPPPPY |
ILSCC...HHR.AKHRLQAQ.RQHEINLI...EA.N.S.LPFYFRFL.NYL.LPPYEEVV..PPTPPP.Y | |
Retrocopy | ILSCCYIGHHRQAKHRLQAQHRQHEINLIPCQEAFNHSVLPFYFRFLLNYL>LPPYEEVVSQPPTPPPAY |
Parental | SAFQLQ-QQ-QLLPPQCGPAGGSP-PGIDPTRGSQGAQSSPLSEPSRSS-TRPPSIADPDPSDLPVDRAA |
S.FQL..QQ.QLLPPQ.G.A.GSP.P...PTRGS.G....P...P...S.TRPPSIADP.PSDLP.DR.A | |
Retrocopy | SDFQLR<QQQQLLPPQ*GLADGSP<PSANPTRGSKGI---PCLSPAEAS<TRPPSIADPEPSDLPGDRVA |
Parental | TKAPGMEPSGSVAGLGELDPGAFLDKDAECREELLKDDSSEHGA--PDSKEKTPGRHRRFTGDSGIEV |
TKA.GM.PSGSVA.LGELDPGAFLDK.AEC.EELLKDDSSEHG...P.SKEK...RH..FTGD.GIEV | |
Retrocopy | TKALGMQPSGSVASLGELDPGAFLDKEAECKEELLKDDSSEHGSAPPNSKEKMLRRHCHFTGDAGIEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .78 RPM | 102 .69 RPM |
bodymap2_adrenal | 0 .23 RPM | 89 .25 RPM |
bodymap2_brain | 0 .02 RPM | 29 .98 RPM |
bodymap2_breast | 0 .97 RPM | 120 .31 RPM |
bodymap2_colon | 1 .43 RPM | 73 .61 RPM |
bodymap2_heart | 0 .24 RPM | 31 .66 RPM |
bodymap2_kidney | 0 .91 RPM | 62 .04 RPM |
bodymap2_liver | 0 .13 RPM | 62 .00 RPM |
bodymap2_lung | 0 .26 RPM | 97 .49 RPM |
bodymap2_lymph_node | 0 .91 RPM | 91 .09 RPM |
bodymap2_ovary | 0 .48 RPM | 76 .68 RPM |
bodymap2_prostate | 0 .28 RPM | 56 .13 RPM |
bodymap2_skeletal_muscle | 0 .22 RPM | 122 .44 RPM |
bodymap2_testis | 3 .36 RPM | 57 .28 RPM |
bodymap2_thyroid | 0 .60 RPM | 179 .20 RPM |
bodymap2_white_blood_cells | 0 .22 RPM | 121 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_3084 |
Macaca mulatta | retro_mmul_1640 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014336 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007532 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018079 | 1 retrocopy | |
Homo sapiens | ENSG00000166272 | 1 retrocopy |
retro_hsap_3774 ,
|
Homo sapiens | ENSG00000239779 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002610 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005555 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012618 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .36 RPM |
CEU_NA11843 | 0 .09 RPM |
CEU_NA11930 | 0 .16 RPM |
CEU_NA12004 | 0 .30 RPM |
CEU_NA12400 | 0 .32 RPM |
CEU_NA12751 | 0 .17 RPM |
CEU_NA12760 | 0 .22 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .19 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .05 RPM |
FIN_HG00277 | 0 .18 RPM |
FIN_HG00315 | 0 .19 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .19 RPM |
FIN_HG00338 | 0 .13 RPM |
FIN_HG00349 | 0 .26 RPM |
FIN_HG00375 | 0 .12 RPM |
FIN_HG00377 | 0 .35 RPM |
FIN_HG00378 | 0 .30 RPM |
GBR_HG00099 | 0 .15 RPM |
GBR_HG00111 | 0 .19 RPM |
GBR_HG00114 | 0 .11 RPM |
GBR_HG00119 | 0 .12 RPM |
GBR_HG00131 | 0 .20 RPM |
GBR_HG00133 | 0 .17 RPM |
GBR_HG00134 | 0 .24 RPM |
GBR_HG00137 | 0 .08 RPM |
GBR_HG00142 | 0 .22 RPM |
GBR_HG00143 | 0 .16 RPM |
TSI_NA20512 | 0 .11 RPM |
TSI_NA20513 | 0 .12 RPM |
TSI_NA20518 | 0 .08 RPM |
TSI_NA20532 | 0 .34 RPM |
TSI_NA20538 | 0 .18 RPM |
TSI_NA20756 | 0 .17 RPM |
TSI_NA20765 | 0 .23 RPM |
TSI_NA20771 | 0 .20 RPM |
TSI_NA20786 | 0 .29 RPM |
TSI_NA20798 | 0 .28 RPM |
YRI_NA18870 | 0 .47 RPM |
YRI_NA18907 | 0 .31 RPM |
YRI_NA18916 | 0 .21 RPM |
YRI_NA19093 | 0 .21 RPM |
YRI_NA19099 | 0 .32 RPM |
YRI_NA19114 | 0 .26 RPM |
YRI_NA19118 | 0 .21 RPM |
YRI_NA19213 | 0 .43 RPM |
YRI_NA19214 | 0 .30 RPM |
YRI_NA19223 | 0 .22 RPM |