RetrogeneDB ID: | retro_btau_995 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:44213145..44213532(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.49223 | ||
Ensembl ID: | ENSBTAG00000015892 | ||
Aliases: | NDUFB4, B15 | ||
Description: | NADH dehydrogenase [Source:RefSeq peptide;Acc:NP_787016] |
Percent Identity: | 94.57 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSFRKYEASRLSSLPTTLDPAEYDISSETRKAQAERLAIRSRLKREYQLQYYDPSRRGVIEDPALVRWTY |
MSF.KY..SRL.SLPTTLDPAEYDISSETRKAQAERLAIRSRLKREYQLQYYDPSRRGVIEDPALVRWT. | |
Retrocopy | MSFPKYKPSRLASLPTTLDPAEYDISSETRKAQAERLAIRSRLKREYQLQYYDPSRRGVIEDPALVRWT* |
Parental | ARSANIYPNFRPNTKTSLLGALFGIGPLVFWYYVFKTDRDRKEKLIQEGKLDRTFNISY |
ARSANIYPNFRPNTKTSLLGALFGIGPL.F.YYVFKTDRDRKEKLIQEGKLDRTFNISY | |
Retrocopy | ARSANIYPNFRPNTKTSLLGALFGIGPLIF*YYVFKTDRDRKEKLIQEGKLDRTFNISY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 24 .01 RPM |
ERP005899_muscle | 0 .05 RPM | 43 .13 RPM |
SRP017611_brain | 0 .09 RPM | 15 .81 RPM |
SRP017611_kidney | 0 .06 RPM | 45 .58 RPM |
SRP017611_liver | 0 .23 RPM | 14 .35 RPM |
SRP030211_testis | 0 .11 RPM | 53 .66 RPM |