>retro_cfam_1096
ATTGCTGGTGGAACATCTAATGAGGGAGCCCTTTTTTTCTCCAAGGAAAATGGAGGGGGGGTTTGCATGCCGGGCTCCTG
TTTACGGCCACGGCAGATGACGTGGTGGCCTTCTTCGGACAGCACTGCCCCATCACTGGGGGGAAGGAAGACATCCTCTT
TGTTACCTATCCAGATGGTAGGCCAACAGGGGGTGCCTTTGTCCTCTTTGCCTGTGAAGAATATACACAGAATGCATTGA
GGAAGCATAAGACTTGTTGGGTAAAAGATACATTGAACTCTTCAGGAGCACAGCAGCTAAAGTCCAGCAAGTGCTGAACC
GATTCTCTTTGGCCCCTCTTATTCCACTTCCAACCCCCCCCCCCCCACCGTTATTCCAATATTACCTAAGCAATTCGTGC
CCCCTACGAATGTTAAGAGACTGTATATGCCTTTGTGGCCTTCCCTATGTGGCCACCATTGAGGACATCCTGGACGTCCT
GGGGAGTTTTCTACGGGTATTTGAACGCATGGGGTGCACGTGGTATTGAATCACCAGGGCCGCCCATCAGGAGATGCCTT
TATCCAGATGAAGTTTGCGGACAGAGCATTTATGGCTGCACAGAAGTGTCATTAAAAAAACCATGAAGGACAGATATGTT
GAAGTCTTTCAGTGTTCAGCTGAGATGAACTTTGTATTAAAGGGGGGTGCTTTAAATCGAAATGGCTATCCCCACCGCCA
TGTAAGTTACCATGCCTGTTTCCTCCCTCCTCCACATTTCCAGCTCCTGCAGCAGTCATTCCTATGGAAGCTGCCATTTA
TCAGCCCTCCGTGCTTTTGAATCTTTGGGCGCTACAGCCCTCCACCGTGTACTCCCCAGCGGGCACCCAGCTATTCATGA
ACTACACTGCGTGCTATCCCAGCTCCCCAGGTTTGCCCACTAGTCTTGGCTACTTCCCTACAGCTGCTAATCTTAGCGGT
GTCCCTCCACAGCCTGGCACAGTGGTCAGAATGCAGGGTCTGGCCTACAATACTGGAGTTAAGGAAATTCTTAACTTCTT
CAAGGTTACCAGTATGCAGCCAGTGATGGACTTGTACACACAAATGACCAGGCCAGGACTCTACCCAAAGAATGGGTTTG
TATT
ORF - retro_cfam_1096 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.71 % |
Parental protein coverage: |
71.79 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
8 |
Retrocopy - Parental Gene Alignment:
Parental | IAGGTSNEVAQFLSKENQVIVRM-RGLPFTATADEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVL |
| IAGGTSNE.A.F.SKEN...V.M..GL.FTATAD.VVAFFGQHCPITGGKE.ILFVTYPDGRPTG.AFVL |
Retrocopy | IAGGTSNEGALFFSKENGGGVCM<AGLLFTATADDVVAFFGQHCPITGGKEDILFVTYPDGRPTGGAFVL |
|
Parental | FACEEYAQNALRKHK-DLLGKRYIELFRSTAAEVQQVLNRFSSAPLIPLPTPPIIP-VLP---QQFVPPT |
| FACEEY.QNALRKHK.DLLGKRYIELFRSTAA.VQQVLNRFS.APLIPLP.....P.V.P....QFVPPT |
Retrocopy | FACEEYTQNALRKHK<DLLGKRYIELFRSTAAKVQQVLNRFSLAPLIPLPXXXXXP<VIPILPKQFVPPT |
|
Parental | NV-RDCIRLRGLPYAATIEDILDFL-GEFSTDIRTHGVHMVLNHQGRPSGDAFIQMKSADRAFMAAQKCH |
| NV.RDCI.L.GLPY.ATIEDILD.L.GEFST.I.THGVH.VLNHQGRPSGDAFIQMK.ADRAFMAAQKCH |
Retrocopy | NV>RDCICLCGLPYVATIEDILDVL<GEFSTGI*THGVHVVLNHQGRPSGDAFIQMKFADRAFMAAQKCH |
|
Parental | -KKTMKDRYVEVFQCSAEEMNFVLMGGTLNRNG-LSPPPCKLPCLSPPSYTFPAPAAVIPTEAAIYQPSV |
| .KKTMKDRYVEVFQCSA.EMNFVL.GG.LNRNG.LSPPPCKLPCL.PPS.TFPAPAAVIP.EAAIYQPSV |
Retrocopy | >KKTMKDRYVEVFQCSA-EMNFVLKGGALNRNG<LSPPPCKLPCLFPPSSTFPAPAAVIPMEAAIYQPSV |
|
Parental | LLNPRALQPSTAYYPAGTQLFMNYTAYYPSSPGSPTSLGYFPTAASLSGVPPQPGTVVRMQGLAYNTGVK |
| LLN..ALQPST.Y.PAGTQLFMNYTA.YPSSPG.PTSLGYFPTAA.LSGVPPQPGTVVRMQGLAYNTGVK |
Retrocopy | LLNLWALQPSTVYSPAGTQLFMNYTACYPSSPGLPTSLGYFPTAANLSGVPPQPGTVVRMQGLAYNTGVK |
|
Parental | EILNFF-QGYQYAADDGLVHTNDQARTLPKEWVCI |
| EILNFF.QGYQYAA.DGLVHTNDQARTLPKEWVCI |
Retrocopy | EILNFF<QGYQYAASDGLVHTNDQARTLPKEWVCI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .00 RPM |
0 .04 RPM |
SRP017611_brain |
0 .08 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
10 .10 RPM |
SRP017611_liver |
0 .00 RPM |
0 .44 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1096 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1096 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1096 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.