RetrogeneDB ID: | retro_cfam_1146 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:24746816..24747095(-) | ||
Located in intron of: | ENSCAFG00000008352 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000023205 | ||
Aliases: | TMEM256, C5H17orf61 | ||
Description: | None |
Percent Identity: | 73.68 % |
Parental protein coverage: | 84.07 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | ALGLASYGAHGAQFPDAYGKELFDKTNRHHFLHSLALLGVPHCRKPLLAGLLLASGTTLFCTSFYYQALS |
ALGLASY...G.QFPDA.GKELFDK...HHFLHSLALLGVP.CRK.L.AGLLL.SGTTLFCTSF.Y.... | |
Retrocopy | ALGLASYKMQGPQFPDA*GKELFDKAKKHHFLHSLALLGVPCCRKALGAGLLL-SGTTLFCTSF-YH*AE |
Parental | GDPSIQTLAPIGGSLLILGWLALAL |
...SI.TLAP..G.LLILGWL.LAL | |
Retrocopy | *RLSIHTLAPVEGRLLILGWLILAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 6 .59 RPM |
SRP017611_brain | 0 .08 RPM | 3 .26 RPM |
SRP017611_kidney | 0 .07 RPM | 48 .08 RPM |
SRP017611_liver | 0 .00 RPM | 13 .56 RPM |