RetrogeneDB ID: | retro_ptro_492 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 10:68005085..68005425(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPTRG00000030987 | ||
Aliases: | TMEM256, C17H17orf61 | ||
Description: | None |
Percent Identity: | 78.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGPAAVFR-RLGALSGAAALGFASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPHCRKPLWAGL |
MAGP.A.F....GA.S.A.ALG.ASY..H..QFPDA.GKELFDKANK.HFLHSLALLGVP.CRKPLWA.L | |
Retrocopy | MAGPGAAFH>GVGASSRAGALGLASYRVHDTQFPDASGKELFDKANKYHFLHSLALLGVPSCRKPLWARL |
Parental | LLASGTTLFCTSFYYQALSGDPSIQTLAPAGGTLLLLGWLALAL |
LLASG.TLF.TSFYYQA..GDPSIQTLAP.GG.LLLLGWLALAL | |
Retrocopy | LLASGMTLFFTSFYYQAWGGDPSIQTLAPVGGSLLLLGWLALAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 8 .38 RPM |
SRP007412_cerebellum | 0 .18 RPM | 3 .12 RPM |
SRP007412_heart | 0 .00 RPM | 4 .61 RPM |
SRP007412_kidney | 0 .00 RPM | 23 .41 RPM |
SRP007412_liver | 0 .00 RPM | 13 .09 RPM |
SRP007412_testis | 0 .00 RPM | 0 .74 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_687 |
Gorilla gorilla | retro_ggor_590 |
Pongo abelii | retro_pabe_536 |
Macaca mulatta | retro_mmul_2408 |