>retro_cfam_1442
AGAATCTTATGGAGAGATAGCATTTTGTATGATTGCATTGGGCATTTAGAAGTTGGAACAGAGACAATCATCGACAAATC
AAAATCCGTGAAGACTAATTTGATGCAGCTCTTTGAGGAGTCTGGGAACACAGATATAGAAGGAATAGATACAACTAATG
CATGCTATGGAAGCACAGCTGCTGTCTTCAATGGGGTTAATTGGATTGAGTCCAGCTCCTGGGATGGACAGTATGCCCTG
GTAGTTGCGGGAGATATTGCTGTATATGCCACAGGAAATTCTAGACCTACAGGTGAAGTGAGATCTGCTGCTCTGCTAAT
TGGGGCAAATGCGCCTTTAATTTTTGACCAAGGACTTCGTGGGACACATATGTAACATGCCTATGACTTTTACAAGCCTG
ACATGCTTTCGGAATATCCTATAGTAGATGGGAAACTCTCCATACAGTGGTACTTCGGTGCACTAGACCGCTACTATTCT
GTCTATCACAAAAAGATCCGAGCCCAGTGGCAGAAACAGGGAAATGATAAAGACTTTACCTTGAATGATTTTGGTTTCAT
GATCTTCCACTCACCCTACTGTAAGCTGGTTCAGAAGTCTCTAGCTCAGATTTTGCTGAATGACATCCTTAATGACCAGA
ACAGAGATAAAAATAGTATCTATAATGGCCTGGAAGCCTTTGGGGATGTTAAATTAGAAGATACTTAGTTTGATAGCGAT
GTGGAAAAGGCATTTACGAAGGCTAGTGCTGAACTCTAATCAGAAAACAAAGGCATCTTTGCTTGTGTCAAATCAAAATG
GAAATATGTACACATCGTCTGTTTATGGCTCCCTCGCTTCTGTTCTAGCACAGTACTCACCTCAACAGCTGGCAGGAAAG
AGGATTGGTGTGTTCTCTTATGGTTCTGGTTTGGCTGCCACCCTGTACTCCCTTGGAGTTATGCAAGATGCCACACCAGG
GTCTGGTCTTGATAAAATAACAGCAAGTTTATGTGACCTCAAATCAAGACTTGACTCAAGAACTTATGTGGAACCAGATG
TCTTTGCTGAAAACATGAAGCTCAGAGAGCACACTCATCACTTGATGAACTATATTCCTCAGAGCTCAGCAGATTCCCTC
TTCGAAGGGACCTGGTACCTCGTCAGAGTGGATGAGAAGCACAGGAGGACCTATGCCCAGAGCCCT
ORF - retro_cfam_1442 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.19 % |
Parental protein coverage: |
77.95 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RLMERTQLPWDSVGWLEVGTETIIDRSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWVE |
| R...R.....D..G.LEVGTETIID.SK.VKT.LM.LF..SGNTDIEGIDTTNACYG.TA..FN..NW.E |
Retrocopy | RILWRDSILYDCIGHLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGSTAAVFNGVNWIE |
|
Parental | SSSWDGRYAMVVCGDIAVYPSGNARPTGGAGAVAMLVGPKAPLTLERGLRGTHMENVYDFYKPDAATEYP |
| SSSWDG.YA.VV.GDIAVY..GN.RPTG.....A.L.G..APL....GLRGTHM...YDFYKPD...EYP |
Retrocopy | SSSWDGQYALVVAGDIAVYATGNSRPTGEVRSAALLIGANAPLIFDQGLRGTHM*HAYDFYKPDMLSEYP |
|
Parental | IVDGKLSIQCYLRALDRCYTLYRQKIQKQWKQAGIDRPFTLDDLQFMIFHTPFCKIVQKSLARLMFNDFL |
| IVDGKLSIQ.Y..ALDR.Y..Y..KI..QW...G.D..FTL.D..FMIFH.P.CK.VQKSLA....ND.L |
Retrocopy | IVDGKLSIQWYFGALDRYYSVYHKKIRAQWQKQGNDKDFTLNDFGFMIFHSPYCKLVQKSLAQILLNDIL |
|
Parental | SASSDTQTSLYKELETFRGLKLEDTYTNKDMDKALQKVS-LDSFNKKTKASLYLSTHNGNMYTSSLYGCL |
| ........S.Y..LE.F...KLEDT....D..KA..K.S.L.S.N.KTKASL..S..NGNMYTSS.YG.L |
Retrocopy | NDQNRDKNSIYNGLEAFGDVKLEDT*FDSDVEKAFTKAS>LNS-NQKTKASLLVSNQNGNMYTSSVYGSL |
|
Parental | ASLLSQHSAQDLAGSRIGAFSYGSGLAASFFSFRVSQDASPGSPLEKLVSSMSDLPKRLASRKRMSPQEF |
| AS.L.Q.S.Q.LAG.RIG.FSYGSGLAA...S..V.QDA.PGS.L.K...S..DL..RL.SR....P..F |
Retrocopy | ASVLAQYSPQQLAGKRIGVFSYGSGLAATLYSLGVMQDATPGSGLDKITASLCDLKSRLDSRTYVEPDVF |
|
Parental | TEIMDQREQFYHKVNFSPPGDTSSLFPGTWYLERVDELYRRKYARRP |
| .E.M..RE...H..N..P.....SLF.GTWYL.RVDE..RR.YA..P |
Retrocopy | AENMKLREHTHHLMNYIPQSSADSLFEGTWYLVRVDEKHRRTYAQSP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .08 RPM |
0 .08 RPM |
SRP017611_brain |
0 .16 RPM |
0 .08 RPM |
SRP017611_kidney |
0 .00 RPM |
6 .80 RPM |
SRP017611_liver |
0 .22 RPM |
1566 .43 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1442 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1442 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1442 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.