>retro_etel_2037
TCTGAGTATCCTATAGTGGATGGCAAGCTCCCCACGCAGTGCTACCTCAGTGCCTTAGTTAGCTGCTATTCTATCTACCT
CATAAAGATCGGGGCCCAAGGGCAGAAGGAGGGAAACGATAAAGATTTCACTTTGAATGATTTTGGCTTCATGATCTTCC
ACTCACTGTATTGTAAACTGGTTCAGAAATTTCTAGTTAGGATGCTGTTGAATGACTTTCTGAATGACCAGAAAAGAGAT
AAAAATAGTTTCTATAGTGGCCTAGAAGCCTTTGGGGGTGTTAAATTAGAAGATACTTACTTTGATAGAGATGTGGAAAA
AGCATTTATGAAGGCTAGTTCTGAACTCCTTAATCAGAAAACGAAGGCATCTTTGCTTGTGTCAAATCAAAATGGAAATA
TGTGCACATCTTCAGTCTACGGTTCCCCTGCCTCTGTTCTAGCACAGGACTCACGTCAGCAGTTGGCAGCAAAAGGACTG
GTGTCTTCTCTGTGCTTCTAGTTTGGATGCCACCTTGTACTCCCTTAAAGTTACACAAGATGCTACACCAGGGTCTGCTC
TTGATCAAAGAACTGCAAGTTTCTGTGACCTTAAATCAAGGCTTGACTCAAGAACTCGTGTGGCACCAGATGTCTTTGCT
GAAAATATGATGCTCAGAAAGCACACTCATCACTTAGTCAGCCATATTCCCCAGGGTCCAATCGATTCACTCGTTGAAGG
AACATGGTACCTGGTTAGAGTGGATGAACTGCACTGAAGAACCTGTGCTCGGTGCCCC
ORF - retro_etel_2037 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.33 % |
Parental protein coverage: |
51.28 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | SEYPVVDGKLSIQCYFRALDRCYSFYRQKIHNQIGKQAGIERPFTMDDFQFMIFHSPFCKLVQKSLGRLM |
| SEYP.VDGKL..QCY..AL..CYS.Y..KI..Q.G...G....FT..DF.FMIFHS..CKLVQK.L.R.. |
Retrocopy | SEYPIVDGKLPTQCYLSALVSCYSIYLIKIGAQ-GQKEGNDKDFTLNDFGFMIFHSLYCKLVQKFLVRML |
|
Parental | FNDFLSASSDTRTSRYKGLEAFSGLNLEDTYTNRDVDAAFQKASLDMFNKKTKASLYLSAHNGNMYTSSL |
| .NDFL........S.Y.GLEAF.G..LEDTY..RDV..AF.KAS....N.KTKASL..S..NGNM.TSS. |
Retrocopy | LNDFLNDQKRDKNSFYSGLEAFGGVKLEDTYFDRDVEKAFMKASSELLNQKTKASLLVSNQNGNMCTSSV |
|
Parental | YGCLASLLSQHSAQDLA-GSRIGAFSY-GSGMAASLFSLRASKDASSGSPLEKLVSSVSDLPNRLASRKR |
| YG..AS.L.Q.S.Q.LA...R.G.FS...S...A.L.SL....DA..GS.L.....S..DL..RL.SR.R |
Retrocopy | YGSPASVLAQDSRQQLA<SKRTGVFSV<ASSLDATLYSLKVTQDATPGSALDQRTASFCDLKSRLDSRTR |
|
Parental | ASAEEFTEIMDQREHFHRKVNFSPPGDTNSLFPGTWYLEQVDEMYRRKYSRRP |
| .....F.E.M..R.H.H..V...P.G...SL..GTWYL..VDE...R...R.P |
Retrocopy | VAPDVFAENMMLRKHTHHLVSHIPQGPIDSLVEGTWYLVRVDELH*RTCARCP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2037 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.