>retro_cfam_1650
TGCCTGTGGTGCTTCATGAAGAATATTTCCAGATATATCACAGACATTAAGCCTTTGCCTCCCAACATAAAAGATAGACT
GATTAAAATAATGAGTACCCAGGGGCAGATAACAGATTCAAATATAAGTGTGATTTTACATCCTGAAGTCCAAACACTAG
ATCTAAGAAGCTGTGACATTTCAGATACTGCTCTCCTACACCTGTGCAACTGCAGAAAATTAAAGAAATTAAATATAAGT
TCCTCAAAAGAAAACAGAATTTCCATAACTTCAAAAGGAATAAAAGCTGTGGCTTCCTCTTGTTCATACGTCCATGAAGC
TTCTTTGAAAAGATGTTGCAATCTTACTGACGAAGGAGTCCTTGCTCTTGCACTCAACTGCCGGCTGTTAAAGATCATTG
ATTTAGGTGGCTGTTTAGGAATTACTGATGTGTCCTTACATGCATTGGGAGAAAACTGCCCATTTTTGCAGTGTGTTGAT
TTTTCAGCTACTCAGGTATCTGATGATGGTGTAGTTGCTCTTGTTAATGGACCTTGTGCCAAGAAATTAGAGGAGATTCA
TATGGGACTTTGTGTAAATCTG
ORF - retro_cfam_1650 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.45 % |
Parental protein coverage: |
74.9 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CLWCFMKNISRYITDIKPLPPNIKDRLIKIMSTQGQITDSNISEILHPEVQTLDLRSCDISDTALLHLCN |
| CLWCFMKNISRYITDIKPLPPNIKDRLIKIMSTQGQITDSNIS.ILHPEVQTLDLRSCDISDTALLHLCN |
Retrocopy | CLWCFMKNISRYITDIKPLPPNIKDRLIKIMSTQGQITDSNISVILHPEVQTLDLRSCDISDTALLHLCN |
|
Parental | CRKLKKLNISSSKENRISITSKGIKAVASSCSYLHEASLKRCCNLTDEGVLALALNCRLLKIIDLGGCLG |
| CRKLKKLNISSSKENRISITSKGIKAVASSCSY.HEASLKRCCNLTDEGVLALALNCRLLKIIDLGGCLG |
Retrocopy | CRKLKKLNISSSKENRISITSKGIKAVASSCSYVHEASLKRCCNLTDEGVLALALNCRLLKIIDLGGCLG |
|
Parental | ITDVSLHALGENCPFLQCVDFSATQVSDDGVVALVNGPCAKKLEEIHMGHCVNL |
| ITDVSLHALGENCPFLQCVDFSATQVSDDGVVALVNGPCAKKLEEIHMG.CVNL |
Retrocopy | ITDVSLHALGENCPFLQCVDFSATQVSDDGVVALVNGPCAKKLEEIHMGLCVNL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
2 .73 RPM |
10 .04 RPM |
SRP017611_brain |
1 .67 RPM |
16 .12 RPM |
SRP017611_kidney |
1 .12 RPM |
6 .80 RPM |
SRP017611_liver |
0 .36 RPM |
4 .13 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1650 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1650 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1650 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.