RetrogeneDB ID: | retro_cfam_1907 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:29111183..29111602(+) | ||
Located in intron of: | ENSCAFG00000014843 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HESX1 | ||
Ensembl ID: | ENSCAFG00000007995 | ||
Aliases: | None | ||
Description: | HESX homeobox 1 [Source:HGNC Symbol;Acc:4877] |
Percent Identity: | 68.06 % |
Parental protein coverage: | 75.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DTCGSSGKDVNLCVHIPSLPNGISLPCTVDHPMPEE-KFLKYENYFSASERLSLKRE-LSWYRGRRPRTA |
DTC.S..KDVNLC.HI.SLPNGIS.PCT..HP.PE....LKYENY.SASERLS...E....YRGRRPRTA | |
Retrocopy | DTCSSLAKDVNLCLHILSLPNGISFPCTMHHPVPEK<RYLKYENY-SASERLSF*KE>AELYRGRRPRTA |
Parental | FTQNQIEVLENVFRVNCYP--GIDIREDLAR-KLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNS |
F.QNQ.EVLENVF.VN.....GI...ED.A..KLNLE.DRIQI.FQN..A.LK.SHRES.F.M.K.NFN. | |
Retrocopy | FSQNQTEVLENVFTVNAMSNAGINTGEDFAQ<KLNLEQDRIQICFQNQHAQLKKSHRESLFSMVKTNFNT |
Parental | NLLE |
NLLE | |
Retrocopy | NLLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .08 RPM |
SRP017611_brain | 0 .08 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .13 RPM | 0 .00 RPM |
SRP017611_liver | 0 .07 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007995 | 2 retrocopies |
retro_cfam_1907 , retro_cfam_954,
|
Choloepus hoffmanni | ENSCHOG00000013897 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012741 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000016854 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017505 | 1 retrocopy |