RetrogeneDB ID:

retro_mputfur_174

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897036.1:3104189..3104741(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000018366
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMPUG00000016854
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_mputfur_174
ATGGCTCCCAGTCTTCCGGAAGGTGCTCGGCTTGGGGAAAGCAAACCCTCGCTCTGCTCCTTTTCCATTGAGAGCATTTT
AGGACTGTACCAGAAGAAAGACTGTGTTCCCTCAATGAAACCCCACAGGCCCTGGGCCGACACCTGCGGCTCCTCAGGGA
AAGATGTTAACCTACGTGTGCATATCCCAAGCCTTCCCAATGGGATATCCTTCCCTTGTACTGTGGATCACCCAGTGCCA
GAAGAAAGATTTTTGAAATACAAAAATTACTTTTCAACCTCAGAAAGACTTTCATTGAAAAGAGAGCTGAGTTGGTATCG
AGGCCGGAGACCCAGAACTGCTTTTACTCAAAACCAGATTGAAGTGTTAGAAAATGTCTTTAGAGTTAACTGCTATCCTG
GCATTGACATCAGAGAAGACTTAGCTCGAAAATTGAATCTAGAGGAAGACAGAATCCAGATCTGGTTCCAAAATCGGCAT
GCAAAGCTAAAAAGGTCCCATAGAGAATCACAGTTTCTAATGGGGAAAAAATTTTCAACACGAATCTCCTGG

ORF - retro_mputfur_174 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.54 %
Parental protein coverage: 92.89 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAPSLPEGARLGESKPSPCSFSIESILGLDQKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS
MAPSLPEGARLGESKPS.CSFSIESILGL.QKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS
RetrocopyMAPSLPEGARLGESKPSLCSFSIESILGLYQKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS
ParentalFPCTVDHPVPEERFLKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED
FPCTVDHPVPEERFLKY.NYFS.SERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED
RetrocopyFPCTVDHPVPEERFLKYKNYFSTSERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED
ParentalLARKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNTNL
LARKLNLEEDRIQIWFQNR.AKLKRSHRESQFLM.KK.F.T..
RetrocopyLARKLNLEEDRIQIWFQNRHAKLKRSHRESQFLMGKK-FSTRI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_174 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_174 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000117221 retrocopy
Canis familiaris ENSCAFG000000079952 retrocopies
Choloepus hoffmanni ENSCHOG000000138971 retrocopy
Callithrix jacchus ENSCJAG000000109811 retrocopy
Cavia porcellus ENSCPOG000000127411 retrocopy
Dasypus novemcinctus ENSDNOG000000036771 retrocopy
Mustela putorius furoENSMPUG00000016854 2 retrocopies
retro_mputfur_112, retro_mputfur_174 ,
Tupaia belangeri ENSTBEG000000175051 retrocopy



Copyright © RetrogeneDB 2014-2017