RetrogeneDB ID: | retro_cfam_1962 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:44082859..44083346(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR1 | ||
Ensembl ID: | ENSCAFG00000005788 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 [Source:HGNC Symbol;Acc:26068] |
Percent Identity: | 58.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGCCY-SSENEDSDQ--DREERKLLLDPSSPPTKALNGAEPNYHSLPPTRTDEQALLS-SILAKTASNII |
M.CCY.SS.NED.DQ..D..E.KLLLDP.S...KAL.G....YHSL..T.TDEQ.LLS.S.L........ | |
Retrocopy | MECCY>SSKNEDLDQAQDQDEQKLLLDPRSSSAKALKGVD--YHSLLSTHTDEQGLLSSSLLR*PPTSLT |
Parental | DVSAADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIA |
...................RQ.ST.LA.LSSSL.H.KKL.P..SLTSQPHQ..AS.PIPFSDLQQVS.IA | |
Retrocopy | HLLWTPRAWSSMSTWTKQGRQHSTHLAMLSSSLPHQKKLLPPQSLTSQPHQMVASKPIPFSDLQQVSKIA |
Parental | AYAYSALSQIRVDAKEELVVQFGIP |
.YAY.ALSQI.VDAK.ELVVQFG.P | |
Retrocopy | VYAYNALSQIQVDAKKELVVQFGAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 24 .57 RPM |
SRP017611_brain | 0 .16 RPM | 20 .32 RPM |
SRP017611_kidney | 0 .26 RPM | 37 .84 RPM |
SRP017611_liver | 0 .00 RPM | 12 .62 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000010854 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000005788 | 1 retrocopy |
retro_cfam_1962 ,
|
Echinops telfairi | ENSETEG00000010979 | 1 retrocopy | |
Felis catus | ENSFCAG00000005320 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000003560 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014117 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010289 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000014730 | 2 retrocopies |