RetrogeneDB ID: | retro_cfam_2079 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:50922882..50923235(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS1 | ||
Ensembl ID: | ENSCAFG00000008927 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23401] |
Percent Identity: | 69.75 % |
Parental protein coverage: | 92.13 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ETHSPAGACRPSQPAMLEHLSSLPTQMDYKGQKLAEQMFQGIILF-SAIVGFIYGYVAEQFGWTVYIVMA |
E.....G...P.QP.MLE.LSSLPT.M.YK..KLAEQMFQGIILF.SAI..FIYGY.AEQ.GWTVYI.M. | |
Retrocopy | ESSLSSGHW*PYQPVMLENLSSLPTRMYYKY*KLAEQMFQGIILF>SAIFVFIYGYLAEQYGWTVYIIMV |
Parental | GFAFSCLLTLPPWPIYRRHPLKWLPVQDSGSEDKKPGERK-IKRHAKNN |
.F.FS.LLTLP.WPIY..HP...L.VQ.SGSEDKKP.ERK..KRHAKNN | |
Retrocopy | RFSFSYLLTLPLWPIYCQHPHM*LCVQESGSEDKKPAERK>NKRHAKNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 35 .95 RPM |
SRP017611_brain | 0 .00 RPM | 34 .54 RPM |
SRP017611_kidney | 0 .00 RPM | 104 .01 RPM |
SRP017611_liver | 0 .00 RPM | 29 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008426 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008927 | 1 retrocopy |
retro_cfam_2079 ,
|
Equus caballus | ENSECAG00000023559 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000007914 | 1 retrocopy | |
Homo sapiens | ENSG00000114902 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028027 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014061 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000000744 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017370 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004106 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000013798 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015011 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006854 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000008576 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007380 | 1 retrocopy |