RetrogeneDB ID: | retro_eeur_25 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_1142:85293..85593(+) | ||
Located in intron of: | ENSEEUG00000001695 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPCS1 | ||
Ensembl ID: | ENSEEUG00000007914 | ||
Aliases: | None | ||
Description: | signal peptidase complex subunit 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:23401] |
Percent Identity: | 78.22 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LEHLNSLPTQMDYKGQKLAEQMFQGIILVSAVVGFAYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR |
LE.L.SLPTQMDYKGQ......F......SAV.GF.Y.YVA.QFGWTVYIVMA.FAFSCLLTLPPWP.YR | |
Retrocopy | LERLSSLPTQMDYKGQS*LSRCFRQSYS-SAVAGFIYRYVAQQFGWTVYIVMARFAFSCLLTLPPWPFYR |
Parental | RHPLKWLPVQDSATEDKKPGERKAKRHAKNN |
RHPLKWLPVQDS.TEDKKPGERKAKR.AKNN | |
Retrocopy | RHPLKWLPVQDSGTEDKKPGERKAKRQAKNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .13 RPM | 12 .73 RPM |
SRP017611_kidney | 2 .44 RPM | 31 .32 RPM |
SRP017611_liver | 0 .64 RPM | 14 .95 RPM |