RetrogeneDB ID: | retro_cfam_439 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 11:6635557..6635965(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM96A | ||
Ensembl ID: | ENSCAFG00000017035 | ||
Aliases: | None | ||
Description: | family with sequence similarity 96, member A [Source:HGNC Symbol;Acc:26235] |
Percent Identity: | 80.58 % |
Parental protein coverage: | 83.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GAARQPRIMEEKALEVYDLIRTIRDPEKPNTLEELEVVTESSVEVQEINEEDYLVIIRFTPTVPHCSLAT |
GAA..P..MEE.AL..YDLIRTIRDPEKPNTL..LEVVTES.V..QEINE.DYLVIIRF.PTVPHCSLAT | |
Retrocopy | GAAWHPGTMEEEALGGYDLIRTIRDPEKPNTLGDLEVVTESNVKIQEINE-DYLVIIRFRPTVPHCSLAT |
Parental | LIGLCLRVKLQRCLPFKHKLEIYISEGTHSTE-EDINKQINDKERVAAAM-ENP-NLREIVEQCVLEPD |
LIGLCL..KL..CLP.KHKLEIYI.EGTHS...EDINKQINDKERVAAAM...P.NLREIVEQCVLEPD | |
Retrocopy | LIGLCL*EKLHWCLPLKHKLEIYIPEGTHSKG<EDINKQINDKERVAAAM>KTPTNLREIVEQCVLEPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 21 .13 RPM |
SRP017611_brain | 0 .00 RPM | 14 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 88 .03 RPM |
SRP017611_liver | 0 .00 RPM | 49 .96 RPM |