Parental gene:

FAM96B, ENSCAFG00000020394

Aliases:None
Description:family with sequence similarity 96, member B [Source:HGNC Symbol;Acc:24261]
Organism:Dog (Canis familiaris)
Coordinates:5:82384776..82386527(+)


>ENSCAFG00000020394
GGCGGCGGCGGGGTCGGGGCCGGCCTCCTGGAGAACGCCAACCCTCTCATCTACGAACGCTCCGGGGAGCGGCCGGTGAC
CGCGGGCGAGGAGGACGAGCAGGTTCCAGACAGCATCGACGCGCGCGAGATCTTCGATCTGATTCGCTCCATCAATGACC
CGGAGCATCCACTGACACTGGAAGAATTGAACGTAGTAGAGCAAGTCCGGGTTCAGGTGAGCGACCCCGAGAGCACGGTG
GCCGTCGCCTTCACACCCACCATTCCACACTGCAGCATGGCCACCCTTATTGGCCTGTCCATCAAAGTCAAACTTCTTCG
ATCCCTTCCCCAGCGTTTCAAGATGGATGTGCACATTACACCAGGGACCCATGCCTCGGAGCATGCAGGGAAAAAGCAGC
TTGCGGATAAGGAACGGGTGGCACCCCCCCTAGAGAATACCCACCTGCTGGAGGTTGTGAACCAGTGCCTGTCAGCCCGC
TCC

Library Parental gene expression (RPM)
SRP012049_cerebellum 42 .33 RPM
SRP017611_brain 16 .99 RPM
SRP017611_kidney 53 .89 RPM
SRP017611_liver 16 .97 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017164 ortholog_one2one 1 retrogene
retro_amel_1340,
Bos taurus ENSBTAG00000013931 ortholog_one2one 1 retrogene
retro_btau_609,
Canis familiaris ENSCAFG00000017035 within_species_paralog 2 retrogenes
retro_cfam_1450, retro_cfam_439,
Felis catus ENSFCAG00000029216 ortholog_one2one 2 retrogenes
retro_fcat_1464, retro_fcat_697,
Mustela putorius furo ENSMPUG00000005303 ortholog_one2one 2 retrogenes
retro_mputfur_1547, retro_mputfur_302,
Mus musculus ENSMUSG00000031879 ortholog_one2one 1 retrogene
retro_mmus_2927,
Sarcophilus harrisii ENSSHAG00000004698 ortholog_one2one 1 retrogene
retro_shar_590,
Tarsius syrichta ENSTSYG00000005006 ortholog_one2one 2 retrogenes
retro_tsyr_1305, retro_tsyr_149,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_479 53.93 55.28
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2. retro_cfam_802 64.89 57.14
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Download FASTA sequences of all ENSCAFG00000020394 retrocopies