RetrogeneDB ID: | retro_cfam_671 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 15:195855..196128(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000005339 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.81 % |
Parental protein coverage: | 62.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VHTITRKPMSWHENLEEPADARFLNLIHHAAQGPRKKYPDTQTESQEIGWDSEPLVSPERDDRRLNHFRV |
VHTITRKPMSWHENLEEPADA.FLNLIHH..QG..KKYPDTQTE.QEIGWDSEP.VSPERD.RRLNH.RV | |
Retrocopy | VHTITRKPMSWHENLEEPADAEFLNLIHHVTQGSWKKYPDTQTEIQEIGWDSEP*VSPERDERRLNHVRV |
Parental | HSDITLYKAKVWSLGEDDRHT |
HSDITL.KAKVWSL.EDD.HT | |
Retrocopy | HSDITLHKAKVWSLREDDCHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 0 .80 RPM |
SRP017611_brain | 0 .00 RPM | 0 .16 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .07 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005339 | 1 retrocopy |
retro_cfam_671 ,
|
Callithrix jacchus | ENSCJAG00000003315 | 1 retrocopy | |
Homo sapiens | ENSG00000186973 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010892 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013230 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000001457 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000624 | 1 retrocopy |