RetrogeneDB ID: | retro_chof_1023 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_18502:420..1800(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPK | ||
Ensembl ID: | ENSCHOG00000010832 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] |
Percent Identity: | 84.42 % |
Parental protein coverage: | 98.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRT |
METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRN.DEM.E..ILLQSKNAG.VIG.GGKNIKAL.T | |
Retrocopy | METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNVDEMLERCILLQSKNAGTVIGEGGKNIKALHT |
Parental | DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG |
DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG | |
Retrocopy | DYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKG |
Parental | SDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIIL |
SDFDCELRLLIHQSLAGG.IGVKGAKIKEL.ENTQTTIKLFQECCPHSTDRV..IGGKPDRVVECIKIIL | |
Retrocopy | SDFDCELRLLIHQSLAGGTIGVKGAKIKEL*ENTQTTIKLFQECCPHSTDRVIFIGGKPDRVVECIKIIL |
Parental | DLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDY |
DLISESPIKG.A.PYDPN.YDETYDYG.F.MMFDDRRGRPVGFPM.GRGGFDRMPPGRGGRPMPPSRR.. | |
Retrocopy | DLISESPIKGCAKPYDPNLYDETYDYGSFMMMFDDRRGRPVGFPMQGRGGFDRMPPGRGGRPMPPSRRN* |
Parental | DDMSPR-RGP-PPPPPGRGGRGGSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSA |
...S.R.RGP.PP...G..G.................RGG.LMAY.RR.RPGDRYDGMVGFSADETWDSA | |
Retrocopy | YECSLR>RGPPPPGRGGWDGSRAQNLCLXXXXXXXXXRGGALMAYLRRRRPGDRYDGMVGFSADETWDSA |
Parental | IDTWSPSEWQMAYEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG |
.DTWSPSEWQMAYEPQGGSGYDYSYAGG.GSYGDL.GPIIT.QVTIPKDLAGS.IGKGGQ.IKQI.HE.. | |
Retrocopy | VDTWSPSEWQMAYEPQGGSGYDYSYAGGYGSYGDLSGPIITAQVTIPKDLAGSTIGKGGQQIKQICHELR |
Parental | ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNS-VKQYA |
.SIK..EPLEGS.D.I.TIT.T...IQNAQYLLQNS..KQY. | |
Retrocopy | VSIKNKEPLEGSKDQIVTITETHNCIQNAQYLLQNS<LKQYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010832 | 2 retrocopies |
retro_chof_1023 , retro_chof_1589,
|
Gorilla gorilla | ENSGGOG00000015500 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000018871 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000008402 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007478 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017109 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004906 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016693 | 7 retrocopies |