RetrogeneDB ID:

retro_chof_1211

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_225987:1859..2289(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SRD5A3
Ensembl ID:ENSCHOG00000004093
Aliases:None
Description:steroid 5 alpha-reductase 3 [Source:HGNC Symbol;Acc:25812]


Retrocopy-Parental alignment summary:






>retro_chof_1211
GAGCTGGCGCTGTCTGCGTTCTTAATACTAGCGTTTCTGTGGATGCACAGCTTGTGAAGACTCTTTAAGTGTTTCTACGT
CAGTGTCTTCTCCATCGCCGTGATTCATGTCGTGCAGTGTGGTTTTGGACTTGTTTACTATGTCCTCCTTGGCCTAACCA
TGCTGAGCCAAGTGCCCACGGATGGCAGAAGGTCCACAGGGAAAAATCTGTTTGATGCAAGCACAGTGGTTCCACATCCT
TCGAAGGATGATGTTCATCTGGTCCTCGGTCCATCAGTATAAGGGCACATAATTCTTAGCAATCTCAGTAAAAATAAAGC
AGGGGTGGTTATTCACTGTAACCGCAGAATCCTTTTGTAGACTGGTTGAATATGTTTTCTCCCCCTAACTATTTAGCACA
GTTGATGACTTACATTCTGTGGCTGTCACC

ORF - retro_chof_1211 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.33 %
Parental protein coverage: 74.49 %
Number of stop codons detected: 1
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalELALSAFLVLAFLWIHSLRRLFECFYISVFSNAVIHVVQYSFGLVYYVLVGLTVLSQVPMDGRNVYVIGK
ELALSAFL.LAFLW.HSL.RLF.CFY.SVFS.AVIHVVQ..FGLVYYVL.GLT.LSQVP.DGR.....GK
RetrocopyELALSAFLILAFLWMHSL*RLFKCFYVSVFSIAVIHVVQCGFGLVYYVLLGLTMLSQVPTDGRR--STGK
ParentalNL-LMQARWFHILGMMMFIWSSAHQYK-CHVILGNLRKNRAGVVIHCNHRI-PYGDWFEYVSSPNYLAEL
NL.LMQA.WFHIL..MMFIWSS.HQYK..H.IL.NL.KN.AGVVIHCN.RI.P..DW....S.PNYLA.L
RetrocopyNL>LMQAQWFHILRRMMFIWSSVHQYK<GHIILSNLSKNKAGVVIHCNRRI<PFVDWLNMFSPPNYLAQL
ParentalMIYI-SMAVT
M.YI.S.AVT
RetrocopyMTYI<SVAVT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1211 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000004093 1 retrocopy
retro_chof_1211 ,
Microcebus murinus ENSMICG000000003171 retrocopy
Pan troglodytes ENSPTRG000000160701 retrocopy
Tursiops truncatus ENSTTRG000000009581 retrocopy



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