RetrogeneDB ID: | retro_chof_1211 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_225987:1859..2289(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRD5A3 | ||
Ensembl ID: | ENSCHOG00000004093 | ||
Aliases: | None | ||
Description: | steroid 5 alpha-reductase 3 [Source:HGNC Symbol;Acc:25812] |
Percent Identity: | 73.33 % |
Parental protein coverage: | 74.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | ELALSAFLVLAFLWIHSLRRLFECFYISVFSNAVIHVVQYSFGLVYYVLVGLTVLSQVPMDGRNVYVIGK |
ELALSAFL.LAFLW.HSL.RLF.CFY.SVFS.AVIHVVQ..FGLVYYVL.GLT.LSQVP.DGR.....GK | |
Retrocopy | ELALSAFLILAFLWMHSL*RLFKCFYVSVFSIAVIHVVQCGFGLVYYVLLGLTMLSQVPTDGRR--STGK |
Parental | NL-LMQARWFHILGMMMFIWSSAHQYK-CHVILGNLRKNRAGVVIHCNHRI-PYGDWFEYVSSPNYLAEL |
NL.LMQA.WFHIL..MMFIWSS.HQYK..H.IL.NL.KN.AGVVIHCN.RI.P..DW....S.PNYLA.L | |
Retrocopy | NL>LMQAQWFHILRRMMFIWSSVHQYK<GHIILSNLSKNKAGVVIHCNRRI<PFVDWLNMFSPPNYLAQL |
Parental | MIYI-SMAVT |
M.YI.S.AVT | |
Retrocopy | MTYI<SVAVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004093 | 1 retrocopy |
retro_chof_1211 ,
|
Microcebus murinus | ENSMICG00000000317 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016070 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000958 | 1 retrocopy |