RetrogeneDB ID: | retro_chof_1376 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_27588:10618..10945(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCHOG00000012210 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 67.89 % |
Parental protein coverage: | 84.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GKRQVLIRPRSEDIDRFLTVMMILGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQ |
GK.QVL..P.S..I..FLTVM....YIG.FEII.D.RAGKIVVN.TG.LN.CG.ISPRFDV.L...EK.Q | |
Retrocopy | GKCQVLVGPCSKVIIWFLTVMIKHSYIGKFEIIEDLRAGKIVVNFTGGLNGCGLISPRFDVRLQV*EKCQ |
Parental | NNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFF |
.NLL.S..FGFIV.TTSAGIM.H..AR.K.TGGKILG.F | |
Retrocopy | SNLLLSHWFGFIVMTTSAGIMGHGKAR*KCTGGKILGLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012210 | 12 retrocopies | |
Gadus morhua | ENSGMOG00000005862 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000011476 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000026996 | 13 retrocopies |