RetrogeneDB ID: | retro_chof_1457 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_29958:14906..15550(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNI2 | ||
Ensembl ID: | ENSCHOG00000000600 | ||
Aliases: | None | ||
Description: | cyclin I family, member 2 [Source:HGNC Symbol;Acc:33869] |
Percent Identity: | 98.15 % |
Parental protein coverage: | 59.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QEVVPWLLRLDNT-FGFSRATFNLALTIISRLLASAKIKKRYLQCVTITSLRLAAKVNEEEELIPRIKDF |
QEVVPWLLRLDNT..GFSRATFNLALTIISRLLASAKIKKRYLQCVTITSLRLAAKVNEEEELIPRIKDF | |
Retrocopy | QEVVPWLLRLDNT<IGFSRATFNLALTIISRLLASAKIKKRYLQCVTITSLRLAAKVNEEEELIPRIKDF |
Parental | IKHYGSAYTPNELLRMELAILDILRWDLYIGTPLDFLTIFHALVVLGWPHVVELLPQRNPSLHVASLTRQ |
IKHYGSAYTPNELLRMELAILDILRWDLYIGTPLDFLTIFHALVVLGWPHVVELLPQRNPSLHVASLTRQ | |
Retrocopy | IKHYGSAYTPNELLRMELAILDILRWDLYIGTPLDFLTIFHALVVLGWPHVVELLPQRNPSLHVASLTRQ |
Parental | LQHCMAGHQLLQFKGSTLALVIITLELERLMPDWLTPTSDLLKKAQINIDQFSYCKKLAKQQLRSF-SSF |
LQHCMAGHQLLQFKGSTLALVIITLELERLMPDWLTPTSDLLKKAQINIDQFSYCKKLAKQQLRSF.SSF | |
Retrocopy | LQHCMAGHQLLQFKGSTLALVIITLELERLMPDWLTPTSDLLKKAQINIDQFSYCKKLAKQQLRSF*SSF |
Parental | CMDTFV |
CMDTF. | |
Retrocopy | CMDTFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000600 | 1 retrocopy |
retro_chof_1457 ,
|
Choloepus hoffmanni | ENSCHOG00000003915 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000013222 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001502 | 1 retrocopy |