>retro_chof_26
AATGTTTCCCCATCCCAGAGAGATGAAGTGATTCAGTGGTTGGCCAAACTCAAGTACCAATTCAACCTTTACCCAGAAAC
GTTTGCCCTGGCTAGCAGTCTTTTGGACAGGTTTTTAGCTACTGTAAAGGCTCACCCAAAATACCTGAGTTGTATTGCAA
TCAGCTGTTTTTTCCTAGCTGCCAAGACTGTTGAGGAGGATGAGAGAATTCCAGTACTGAAGGTATTGGCAAGAGACAGT
TTCTGTGGATGTTCTTCCTCTGAAATTCTGAGAATGGAGAGAATTATTCTGGATAAGCTGAATTGGGATCTTCACACAGC
TACACCATTGGATTTTCTTCACATTTTCCATGCCATTGCAGTGTCAACTAGGCCTCAGTTACTCTTCAGTTTGCCCAAAC
TGAGCCCATCCCAACATTTGGCGGCCCTTACCAAGCAACTACTTAAGTGTATGGCCTGCAATCAACTTTTGCAGTTCAAA
GGATCTATGCTTGCTCTGGCCATGGTTAGTTTGGAAATGGAGAAACTTATTCCTGATTGGCTCTCTCTTACAATTGAATT
GCTTCAGAAAGCACAGATGGATAGCTCCCAGTTGATCCACTGTCGGGAGTTTGTGGCACATCACCTTTCTACTCTGCAGT
CTTCTCTGCCTCTAAATTCCGTTTATGTCTACCGTCCCCTCAAGCACACCCTGGTGACCTGTGACAAAGGAGTGTTCAGA
TTACATCCCTCCTCTGTCCCAGGCCCAGACTTCTCCAAGGACAACAGCAAACCAGAAGTGCCAGTCAGAAGTACAGCAGC
CTTCTGCCATCATCTCCCAGCTGCCAGTGGGTGCAAACATACCTCTGCTAAACGCAAAGTAGAGGAAATGGAAGTGGATG
ATTTCTATGATGGAATCAAGCTGCTCTATAATGAAGATAGTGCTTCAGAAAACGTGGGTTCTGTGTGTGGCACTGATTTA
TCAAGGCAAGAGGGACATGGTTCCCCTTGCCCACCTCTGCAACCTGTTTCTGTCATGTAG
ORF - retro_chof_26 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.23 % |
Parental protein coverage: |
89.89 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYFFCIAISCFFLAAKTVEEDERI |
| NVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKY..CIAISCFFLAAKTVEEDERI |
Retrocopy | NVSPSQRDEVIQWLAKLKYQFNLYPETFALASSLLDRFLATVKAHPKYLSCIAISCFFLAAKTVEEDERI |
|
Parental | PVLKVLARDSFCGCSSSEILRMERIMLDKLNW-LHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHL |
| PVLKVLARDSFCGCSSSEILRMERI.LDKLNW.LHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHL |
Retrocopy | PVLKVLARDSFCGCSSSEILRMERIILDKLNWDLHTATPLDFLHIFHAIAVSTRPQLLFSLPKLSPSQHL |
|
Parental | AALTKQLLKCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLSLTIELLQKAQMDSSQLIHCREFVAHYLS |
| AALTKQLLKCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLSLTIELLQKAQMDSSQLIHCREFVAH.LS |
Retrocopy | AALTKQLLKCMACNQLLQFKGSMLALAMVSLEMEKLIPDWLSLTIELLQKAQMDSSQLIHCREFVAHHLS |
|
Parental | TLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPVRSTAAFCHHLPAASGCKH |
| TLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPVRSTAAFCHHLPAASGCKH |
Retrocopy | TLQSSLPLNSVYVYRPLKHTLVTCDKGVFRLHPSSVPGPDFSKDNSKPEVPVRSTAAFCHHLPAASGCKH |
|
Parental | TSAKRKVEEMEVDDFYDGIKRLYNEDSASENVGSVCGTDLSRQEGHGSPCPPLQPVSVM |
| TSAKRKVEEMEVDDFYDGIK.LYNEDSASENVGSVCGTDLSRQEGHGSPCPPLQPVSVM |
Retrocopy | TSAKRKVEEMEVDDFYDGIKLLYNEDSASENVGSVCGTDLSRQEGHGSPCPPLQPVSVM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_26 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.