RetrogeneDB ID: | retro_chof_1528 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_31607:14692..15354(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SCLY | ||
Ensembl ID: | ENSCHOG00000013824 | ||
Aliases: | None | ||
Description: | selenocysteine lyase [Source:HGNC Symbol;Acc:18161] |
Percent Identity: | 76.58 % |
Parental protein coverage: | 68.87 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RKAKDIIRAARENLAKMISGEPQDIIFTSGGTESNNLVIHSVVKHFQENQTSREDKTEHHKPHFITSTVE |
RKAKDIIRAARENLAKMIS.EPQDIIFTSGGTESNNLVIHS.VKHF.ENQ.S.EDK.E.HKPHFITSTVE | |
Retrocopy | RKAKDIIRAARENLAKMISREPQDIIFTSGGTESNNLVIHSAVKHFHENQAS*EDKAECHKPHFITSTVE |
Parental | HDS-VRLPLEHLVNEDVAAVTFVSVSEVSEWAGVEEN-AAVRLRTEVVPFKI-NNETASIMPVPAISQRV |
.DS.V.LPL.HLV.ED.AAVTFV.VS.VS....V....AAV...T..V.....NN.T..IMPV..ISQRV | |
Retrocopy | RDS<VWLPLAHLVKEDMAAVTFVLVSKVSGQVEVDDVLAAVHPTTCLVTVMLANNKTGVIMPVSVISQRV |
Parental | KALNQRRAAVGLPPVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPRIGALYVRGLGELTPLHPML |
KALN.R.A..GLPPVLVH.DAAQALGKRRVD.EDL..DFLTIVG.KF.GPRIGALYV.GL.ELTPL.PML | |
Retrocopy | KALNWRWATSGLPPVLVHRDAAQALGKRRVDMEDLDMDFLTIVGYKFCGPRIGALYV*GLVELTPLYPML |
Parental | FGGGQERHFRPG |
FGGGQE.HFRPG | |
Retrocopy | FGGGQEQHFRPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013824 | 2 retrocopies |
retro_chof_1528 , retro_chof_1707,
|
Callithrix jacchus | ENSCJAG00000000471 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002777 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002756 | 1 retrocopy |