RetrogeneDB ID: | retro_chof_1539 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_31773:12498..13628(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX18 | ||
Ensembl ID: | ENSCHOG00000004191 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Source:HGNC Symbol;Acc:2741] |
Percent Identity: | 69.87 % |
Parental protein coverage: | 59.13 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | DLLAAAKTGSGKTLAFLIPAIELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELM-THHVHTYGLIM |
DLL.AAKTGSGKT.AFLI...ELIVKLKFMP.NGTG.LI.SPTR..AMQTFGVLKELM..H.VHT.GLIM | |
Retrocopy | DLLVAAKTGSGKTRAFLILVVELIVKLKFMPKNGTGLLIISPTRKMAMQTFGVLKELM>NH-VHTNGLIM |
Parental | GGSNRSAEAQKLVNGINIIVATPGRLLDHMQNTPGFMYKNLQCLV-IDEADRILDVGFEEE-LKQIIKLL |
.GS.R.AEAQKL.NGIN..VAT...L.DH.QNTPGFMYKNLQCLV.IDE.D.ILDV.FEE..LKQIIKLL | |
Retrocopy | EGSSRFAEAQKLGNGINTSVATLS*LPDHTQNTPGFMYKNLQCLV<IDEVDCILDVEFEED<LKQIIKLL |
Parental | PVRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKTNATVDGLEQGYVVCPSE-KRFLLLFTFPKKN |
P..RQTMLFSA..T.KVE.L.RISLK.EPLY.GV.DDKTNATV..L.Q...VCPSE.KRFLLLFTF..KN | |
Retrocopy | PISRQTMLFSAM*TLKVEELERISLKNEPLYIGV-DDKTNATVHCLQQECIVCPSE>KRFLLLFTFL*KN |
Parental | RRKKMMVFFSSCKSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLDIPE |
..KKMMV.FS.CKS.KY.Y..LN.I.LPVLAIHG.Q.QNK..TTFFQFCN..S...L..D.A..GL.IPE | |
Retrocopy | *KKKMMVYFSFCKSMKYRYKFLNHIYLPVLAIHGRQTQNKQ-TTFFQFCNTNSEIPLGIDMAVQGLAIPE |
Parental | VDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPE-ELGFLRYLKQSKVPLSEFEFSW-SKISDI |
VDWIVQ.DPPDDPKE.I..VGRTARGLNGRGHAL.IL.P..EL.FL..LKQS..PLSEFEFSW...I.DI | |
Retrocopy | VDWIVQDDPPDDPKEGIRHVGRTARGLNGRGHALPILLPRGELCFLH*LKQSRAPLSEFEFSW<APIFDI |
Parental | QSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLK |
.SQLEKLI..................R...SH..K | |
Retrocopy | HSQLEKLIXXXXXXXXXXXTSFINQSRKCVSHTFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004191 | 6 retrocopies |
retro_chof_1221, retro_chof_1539 , retro_chof_1636, retro_chof_2416, retro_chof_2418, retro_chof_721,
|
Callithrix jacchus | ENSCJAG00000021414 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000017607 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021343 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000533 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001701 | 1 retrocopy |