>retro_chof_159
AATGCCCTCAGATGGTTGATAATGGAGAAAAATCACAGCAATGTTCCACGTTCCAAAGAGGAACTTGATAAAGAACTACC
AGTGCTTAAACCCTATTTTATCAATGACCCTGAAAAAGCTGGAGTGAAGGAAGCTGGCTTAAGAGTCAAGTGGCTGGGAC
ATGCAACAGTAATGCTAGAAATGGGTGAGATCTTATTTCTCACGGATCCCATTTTTAGCCAATGTGTTTCACCGTCCCAG
TAAGTGGGTCTGAAATACTTTTGTTGTCCTCCATGCACAATATTTGAGCTGCCCCCAGCAGATGTAGTCCTTTTCAGTCA
CAACCACTATGACCACCTGGACTACAATTCTGTCATTGCTCTGAACGAGTGATTCGGTGATGAGTTGAGATGGTTTGTGC
CTTTGGGTCTCCTCAACTGGATCCAAAAATGTGGCTGTGAGAATGTGATTGAGCTGGACTGGTGGGAGGAGAACTGTGTC
CCCAGACATGACGAAGTCACCTTTGTCTTTACACCTTCCAAGCACTGGTGTTAAGAGGACTCTAATTGATGGCAATAAGG
TTCTGTGGGGCAGCTGGTCTGTCTTGGGGCCTTGGAATAGAGTCTTTTTGCAGGAGATACTGGTTATTGCTCTGCTTTCA
AAGAGATAGGAGAAAGATTTGGATCTTTCAACCTTGCAGCTACTCCTATTGGAGCTTACAAACCCAGGTGGTTTATGAAA
TGCCAGCATATAGACCTAGAATTTGTAAGGATTCACAATGATGTTCAAGCAAACAAATCTGTGGCAATTCACTGGAGGAA
TTTTGTCTTAGTAAATGAGCATTATTTAGAGCCTCCAGTGAAATAGAGTGAAGCTCTATAAAAATATGGACCTACGACTG
AAGATCTTTTTGTCTTGAAGCATGGAGAATCAATATTCCTAAATACTGATGACAAAAACTTTGAA
ORF - retro_chof_159 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.79 % |
Parental protein coverage: |
80.15 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | NALRWLIMEKDHSNVPRSKEELDKELPVLKPYFINDPEKAGVKEAGLRVKWLGHATVMLEMGEILFLTDP |
| NALRWLIMEK.HSNVPRSKEELDKELPVLKPYFINDPEKAGVKEAGLRVKWLGHATVMLEMGEILFLTDP |
Retrocopy | NALRWLIMEKNHSNVPRSKEELDKELPVLKPYFINDPEKAGVKEAGLRVKWLGHATVMLEMGEILFLTDP |
|
Parental | IFSQCVSPSQ-VGLKYFCCPPCTIFELPPADVVLISHNHYDHLDYNSVIALNERFGNELRWFVPLGLLDW |
| IFSQCVSPSQ.VGLKYFCCPPCTIFELPPADVVL.SHNHYDHLDYNSVIALNE.FG.ELRWFVPLGLL.W |
Retrocopy | IFSQCVSPSQ*VGLKYFCCPPCTIFELPPADVVLFSHNHYDHLDYNSVIALNE*FGDELRWFVPLGLLNW |
|
Parental | MQKCGCENVIELDWWEENCVPRHDKVTFVFTPSQHWC-KRTLMDDNKVLWGSWSVLGPWNRFF-FAGDTG |
| .QKCGCENVIELDWWEENCVPRHD.VTFVFTPS.HWC.KRTL.D.NKVLWGSWSVLGPWNR.F.FAGDTG |
Retrocopy | IQKCGCENVIELDWWEENCVPRHDEVTFVFTPSKHWC>KRTLIDGNKVLWGSWSVLGPWNRVF<FAGDTG |
|
Parental | YCPAFEEIGKRFGPFDLAAIPVGAYEPRWFMKWQHIDPEEAVRIHIDVQAKKSVAIHWGTFVLANEHYLD |
| YC.AF.EIG.RFG.F.LAA.P.GAY.PRWFMK.QHID..E.VRIH.DVQA.KSVAIHW..FVL.NEHYL. |
Retrocopy | YCSAFKEIGERFGSFNLAATPIGAYKPRWFMKCQHID-LEFVRIHNDVQANKSVAIHWRNFVLVNEHYLE |
|
Parental | PPVKLREALGRYGLTTEDFFVLKHGESRYLNSDDKNVE |
| PPVK..EAL..YG.TTED.FVLKHGES..LN.DDKN.E |
Retrocopy | PPVK*SEAL*KYGPTTEDLFVLKHGESIFLNTDDKNFE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_159 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
7 retrocopies.