>retro_chof_1882
TTGCTACAGATGAAAGGGTCTCAGTCTGAATTTGAACAGCAGGAATGGTTGCTTGCCATGTTGGAGCAGAAAAATGGTGA
AATGAAACATCTTTAGGTGAAATAAGTTTGGAGAAATTTAAGAGTTTATATGAAAGTATGGAATCTAAATCTTCATCCAA
CTCGGGCATTCTGGAAGATAACACCTATTATACAGATTTACTTCAGATAAAACTTGATAACTTAAACAAAGAAAATGAAA
GCACTAAAGGCGAACTCTCTATACAGCGAATGAAAGCATTATTTGAGAGCCAGCGGGCTCTGGATATTGAGCGAAAGCTT
TTTGCAAATGAAAGATGCCTCCAGCTCTCCCAAAGTGAAAATATGAAACTGAGAGCTAAACTAGATGAATTAAAGCTGAA
GTATGAACCTGAAGAGAAAATTGAAGTGCCTGTACTCAAAAAGAGGCGTGAGGTACTGCCTGTGGATGTAACCACTTCTA
AAGATGTATGTGACAACTGTGCTGTCAGGGAAGAAATGTATAGATTGCCGACTCTGAAAGAGGAGGCACAATCATGTTCT
AACAATTTAGAAGACAACAACCTGCAGTTAGAAAAGACAGTTTCTGTAAACACACCAGTAGTCAGTCTCTCACCTAACAA
AAATCTATCAACGAATATGCAACCAGCGAAGGAAAAGAAATGTGTGAAACTCACAGGAGTTCCAGCTGACTCTGAAGTCT
TAAGTGAAAGAAGTGGAAACACCCCTAACTCTTCCAGGTTAGCTGCTGAATCAAGGCTTCAAACAGAAGTTCAAGAAGGG
AAGGAAACTGCAAGCAAATTGGAAAAGGAAACTTGTAAGAATCACACCCTATTCTATACGTATCCTCCAATCGACTCCAG
AGACACAGTGCCCTCAGCAG
ORF - retro_chof_1882 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
95.41 % |
Parental protein coverage: |
50.08 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LLQMKGSQSEFEQQERLLAMLEQKNGEIKHL-LGEIRSLEKFKSLYESMESKSSSNSGILEDNTYYTDLL |
| LLQMKGSQSEFEQQE.LLAMLEQKNGE.KHL.LGEI.SLEKFKSLYESMESKSSSNSGILEDNTYYTDLL |
Retrocopy | LLQMKGSQSEFEQQEWLLAMLEQKNGEMKHL<LGEI-SLEKFKSLYESMESKSSSNSGILEDNTYYTDLL |
|
Parental | QIKLDNLNKENESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSQSENMKLRAKLDELKLKYEPE |
| QIKLDNLNKENESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSQSENMKLRAKLDELKLKYEPE |
Retrocopy | QIKLDNLNKENESTKGELSIQRMKALFESQRALDIERKLFANERCLQLSQSENMKLRAKLDELKLKYEPE |
|
Parental | EKIEVPVLKKRREVLPVDITTSKDVCDNCAVREEVYRWPTLKEEAQTCSNNLEDNNLQLEKTVSINTPVV |
| EKIEVPVLKKRREVLPVD.TTSKDVCDNCAVREE.YR.PTLKEEAQ.CSNNLEDNNLQLEKTVS.NTPVV |
Retrocopy | EKIEVPVLKKRREVLPVDVTTSKDVCDNCAVREEMYRLPTLKEEAQSCSNNLEDNNLQLEKTVSVNTPVV |
|
Parental | SLSPNKNLSTNMQPTKEKKCVKLTGVPADSEVLSERSGNTPNSSRLAAESRLQTEVQEGKETASKLEKET |
| SLSPNKNLSTNMQP.KEKKCVKLTGVPADSEVLSERSGNTPNSSRLAAESRLQTEVQEGKETASKLEKET |
Retrocopy | SLSPNKNLSTNMQPAKEKKCVKLTGVPADSEVLSERSGNTPNSSRLAAESRLQTEVQEGKETASKLEKET |
|
Parental | CK-KSHPILYVSS-KSTPETQCPQQ |
| CK..SHPILYVSS..STPETQCPQQ |
Retrocopy | CK<ESHPILYVSS<QSTPETQCPQQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_1882 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
6 retrocopies.