RetrogeneDB ID: | retro_chof_1958 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_43333:5533..5997(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HUS1 | ||
Ensembl ID: | ENSCHOG00000001764 | ||
Aliases: | None | ||
Description: | HUS1 checkpoint homolog (S. pombe) [Source:HGNC Symbol;Acc:5309] |
Percent Identity: | 85.26 % |
Parental protein coverage: | 56.2 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFRAKIVDGACLNHFTRVSNMISKLAKTCTLRISPDKLN-FILSDRVANGGVSMWCELEQENYFSEFQM |
MKF.AKIVD.ACLNHF..VSNMISKLAKTCTL.IS.DKLN.FILSDRVANGGVSMWCELE.EN.F.EFQM | |
Retrocopy | MKFQAKIVDRACLNHFM*VSNMISKLAKTCTLHISLDKLN<FILSDRVANGGVSMWCELEWENFFGEFQM |
Parental | EGVSAENNEIYLELTSENLSRALKTAQNARTLKIKLTNKHFPCLTVSVELLSLSSTSRIVTHDIPIKVI- |
EGVS.ENNEI.LELT..NLS.ALKTAQNAR.LKIKLTNKHFPC.TVSVELLS.SSTS.IV.HDIPIKVI. | |
Retrocopy | EGVSTENNEIDLELTPGNLS*ALKTAQNARVLKIKLTNKHFPCFTVSVELLSVSSTSCIVSHDIPIKVIL |
Parental | KKLWKDLQEPTIPDSD |
.KLWKDLQEP.IPDSD | |
Retrocopy | RKLWKDLQEPIIPDSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001764 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000006582 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004497 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027263 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012683 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025821 | 1 retrocopy | |
Sorex araneus | ENSSARG00000012348 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027204 | 1 retrocopy |