RetrogeneDB ID: | retro_chof_1974 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_44157:5912..6321(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2W | ||
Ensembl ID: | ENSCHOG00000005910 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616] |
Percent Identity: | 79.56 % |
Parental protein coverage: | 98.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | QKELLVFQNEQFLAVALNEKSVQNSIA-WIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSP-QVMFTGEN |
QKELL..QN.......LNEKSVQNSI..WI.DM.GAPG.LYEGE.FQLLFKFSSRYPFDSP.QVMF.GEN | |
Retrocopy | QKELLALQNCPPPGMTLNEKSVQNSITQWIIDMGGAPGNLYEGEHFQLLFKFSSRYPFDSP>QVMFAGEN |
Parental | IPVHPHVYSNGHICLSLLTEDWSPALSVQS-VLTIIRWLSSCKEKRRPPDNSFYVRTCNKNPKKTKW |
IPVHPHVYSNG.ICLS.LTEDWSPA.SVQS..L.I...LS.CKEKR.PPDNSFYVRTCNKNPKKTKW | |
Retrocopy | IPVHPHVYSNGYICLSILTEDWSPAISVQSDCLSIFSMLSCCKEKRPPPDNSFYVRTCNKNPKKTKW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005054 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005910 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012909 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011886 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000027009 | 3 retrocopies | |
Sorex araneus | ENSSARG00000007886 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011410 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000001527 | 2 retrocopies |