RetrogeneDB ID: | retro_eeur_41 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2436:15805..16142(+) | ||
Located in intron of: | ENSEEUG00000001984 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2W | ||
Ensembl ID: | ENSEEUG00000011886 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2W (putative) [Source:HGNC Symbol;Acc:25616] |
Percent Identity: | 84.35 % |
Parental protein coverage: | 77.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | IVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQS |
IV..EGAPGTLY.GEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH.CLSIL.EDWSPALSVQS | |
Retrocopy | IVVLEGAPGTLYDGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHVCLSILMEDWSPALSVQS |
Parental | VCLSIISMLSSCKEKRRPPDNSFYVR-TCNKNPKKTKWW-YHDDT |
VCLSIISMLSSCKEKR.PPDN.F.VR.TCN....KTKW..YH... | |
Retrocopy | VCLSIISMLSSCKEKRQPPDNAFSVR<TCNRTQRKTKWC<YHESS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 25 .78 RPM |
SRP017611_kidney | 0 .19 RPM | 13 .13 RPM |
SRP017611_liver | 0 .00 RPM | 6 .27 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005910 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012909 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000010643 | 14 retrocopies | |
Erinaceus europaeus | ENSEEUG00000011886 | 1 retrocopy |
retro_eeur_41 ,
|
Myotis lucifugus | ENSMLUG00000027009 | 3 retrocopies | |
Sorex araneus | ENSSARG00000007886 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011410 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000001527 | 2 retrocopies |