RetrogeneDB ID: | retro_chof_2058 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_46960:8305..8960(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000010080 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.22 % |
Parental protein coverage: | 54.21 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | AMVLELLG-PSLE-DLFDLCDRTFTLKTVLMIAIQLLSRMEYVHSKNLIYRDVKPENFLIGRQGNKKEHV |
.M.L.LLG..SLE.DLFDLCDRTF.LKT..MI.IQL.S.ME.VHSKNLIYRDVK.E.FLIG.QGNK.... | |
Retrocopy | SMMLQLLG<TSLE<DLFDLCDRTFSLKTGCMIGIQLISHMEFVHSKNLIYRDVKHEEFLIGQQGNKTQKN |
Parental | IHIIDFGLAKE-YIDPETKKHIPYREHKSLTGTA-RYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLP |
.....F...K..YI.PETKKHIPY.EHKSLTG.A.RY...NTHLGK.QSRR.DLE.LG.MFM.FLR...P | |
Retrocopy | YSHYRFWFGKD<YINPETKKHIPYSEHKSLTGSA>RYINMNTHLGKKQSRRNDLELLGNMFMNFLRRHHP |
Parental | WQGLKADTL-KERYQKIGDTKRNTPIEALCENFPEEMATYLRYVRRLDFFEKPDYEYLRTLFTDLFERKG |
WQGLKADTL.K..YQKIGDTK..T.IE.LCENF.EEMATYL.Y.R..DFFEKP.Y.YLR.LF.DL...KG | |
Retrocopy | WQGLKADTL>KKKYQKIGDTK*ATLIEVLCENFSEEMATYLCYERW*DFFEKPEYGYLRKLFNDLCDQKG |
Parental | -YTFDYVYDWVGRPI |
.....Y.YD...... | |
Retrocopy | <HVSEYKYDRISKQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003299 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010080 | 3 retrocopies |
retro_chof_1577, retro_chof_2058 , retro_chof_216,
|
Dasypus novemcinctus | ENSDNOG00000018857 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000016620 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000003013 | 1 retrocopy |