>retro_chof_753
AGTGATGCACCCTGTGTTGTAAAAGCGGAACCCAGTGGCAATGGACTGCTCATTACTGAATTAAAGTTCTACCAGCGAGC
TGCTAAACCAGAGCAAATTCAGAAATGGATTCATTCCCATAAACTGAAGTACCTGGGTGTTCCTAAGTATTGGGGGTCTG
GTCTACATGATAAAAATGGAAAAAGTTATAGGTTTATGATAATGGATCGCTTTGGGAGTGACCGTCAGAAAATATATGAA
GCAAATGCCAAAAGATTTTCTCAAAAGACTGTTTTGAAGCTAAGCTTAAGAATTCTGGATATTCTGGAATATATCCATGA
GCATGAATATGTACACGGAGATATCAAGGCCTCAAATCTTCTTCTGAGCTACAAGAATCCTGACCAGGTGTACCTGGTAG
ATTATGGCCTTGCTGATCGATACTGTCCAGAAAGGAGTCCATAAGGAATACAAAGAAGACCCCAAAAGATGTCATGATGG
CACTCTTGAATTCACCAGCACTGATGCACAATGGCGTGGCTCCCTCAAGACGGGGTGATTTGGAAATACTTGGTTATTGC
ATGATCTGGTGGCTCAGTGGCTGTCTTCCTTGGGAGGATAATTTGAAAGATCCTAACTATGTTAGAGGTTCCAAACTTAG
ATACAGAGAAAATATTGCCGGTTTGGTGGACAAATGTTTTCCTGAGAAAAACAAACCAGATGAAATTGCTAAATACATGG
AAACAGTGAAATTACTGGACTATACCGAAAAACCTCATTATCAAAATTTACGAGATATACTTTTGCAAGGACTCAAAGCT
ATAGGAAGTAAGGATGATGGCACA
ORF - retro_chof_753 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.26 % |
Parental protein coverage: |
53.85 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | NDARHVIKVEYQENGPLFSELKFYQRAAKKEYIKRWIALKQLDYLGIPLFYGSGLTTFKGRSYRFMVMER |
| .DA..V.K.E...NG.L..ELKFYQRAAK.E.I..WI....L.YLG.P...GSGL....G.SYRFM.M.R |
Retrocopy | SDAPCVVKAEPSGNGLLITELKFYQRAAKPEQIQKWIHSHKLKYLGVPKYWGSGLHDKNGKSYRFMIMDR |
|
Parental | LGKDLQKISDQNGT-FKKSTVLHLGIRMLDVLEYIHENEYIHGDIKAANLLLGYKNPEQVYLADYGLSYR |
| .G.D.QKI...N...F...TVL.L..R.LD.LEYIHE.EY.HGDIKA.NLLL.YKNP.QVYL.DYGL..R |
Retrocopy | FGSDRQKIYEANAKRFSQKTVLKLSLRILDILEYIHEHEYVHGDIKASNLLLSYKNPDQVYLVDYGLADR |
|
Parental | YCPN-GNHKEYQENPRKGHNGTIETSLD-AHKGVALSRRSDLEILGYCMLRWLCGKLPWERNLKDPVAVQ |
| YCP..G.HKEY.E.P...H.GT.E......H.GVA.SRR.DLEILGYCM..WL.G.LPWE.NLKDP..V. |
Retrocopy | YCPE>GVHKEYKEDPKRCHDGTLEFTST>MHNGVAPSRRGDLEILGYCMIWWLSGCLPWEDNLKDPNYVR |
|
Parental | TAKTNLLDELPESVFKWAPSGSSCYEIAQFLACAHSLAYDEKPDYQILKKILNPGGIPLGPLEFST |
| ..K..........V.K..P......EIA........L.Y.EKP.YQ.L..IL..G....G.....T |
Retrocopy | GSKLRYRENIAGLVDKCFPEKNKPDEIAKYMETVKLLDYTEKPHYQNLRDILLQGLKAIGSKDDGT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_753 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.