RetrogeneDB ID: | retro_chof_2326 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_66120:3521..4199(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPC25 | ||
Ensembl ID: | ENSCHOG00000013303 | ||
Aliases: | None | ||
Description: | SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:24031] |
Percent Identity: | 97.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MIEDELALFDKSINEFWNKFKSAVSDTSCQMVGLRDTYKDSIKAFAEKLSMKLKEEDRMVEMFLEYQNQI |
MIEDELALFDKSINEFWNKFKSAVSDTSCQMVGLRDTYKDSIKAFAEKLSMKLKEEDRMVEMFLEYQNQI | |
Retrocopy | MIEDELALFDKSINEFWNKFKSAVSDTSCQMVGLRDTYKDSIKAFAEKLSMKLKEEDRMVEMFLEYQNQI |
Parental | CQQNQRIQEKKDNLLKLIAEVKCKKQEMEVLTANIQDLKEEYAKKKETISTANKANEERLKRLQKSADLY |
CQQNQRIQ...DNLLKLIAEVKCKKQEMEVLTANIQDLKEEYAKKKETISTANKANEERLKRLQKSADLY | |
Retrocopy | CQQNQRIQXXXDNLLKLIAEVKCKKQEMEVLTANIQDLKEEYAKKKETISTANKANEERLKRLQKSADLY |
Parental | KDRLGLEIRKIYGDKLQFIFTNIDPKHPENPYMFSLRLNEARDYEVSDSAPYLEHLAEFQENVRKTNNFS |
KDRLGLEIRKIYGDKLQFIFTNIDPKHPENPYMFSL.LNEARDYEVSDSAPYLEHLAEFQENVRKTNNFS | |
Retrocopy | KDRLGLEIRKIYGDKLQFIFTNIDPKHPENPYMFSLHLNEARDYEVSDSAPYLEHLAEFQENVRKTNNFS |
Parental | AFLANVRKTFTSMVCN |
AFLANV.KTFTSMVCN | |
Retrocopy | AFLANVWKTFTSMVCN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013303 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000005926 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004429 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015642 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004668 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007753 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012559 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006112 | 1 retrocopy |