RetrogeneDB ID: | retro_dnov_826 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_111386:3129..3649(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPC25 | ||
Ensembl ID: | ENSDNOG00000004429 | ||
Aliases: | None | ||
Description: | SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:24031] |
Percent Identity: | 91.38 % |
Parental protein coverage: | 76.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MIEDELALFDKSINEFWNKFKGTVSDNSCQMVGLRDTYKDSIKAFAEKLSVKLKEEDRMVEMFLEYQNQI |
MIE.ELALFDKSINEFWNK.K.TVSDNSCQMVGLRDTYKDS.KAFAEKLSVKLKEEDRM.EMFLEYQNQI | |
Retrocopy | MIEYELALFDKSINEFWNKLKRTVSDNSCQMVGLRDTYKDSVKAFAEKLSVKLKEEDRMFEMFLEYQNQI |
Parental | WRQNKLIQEKK-DNLLKLIAEVKDKKQEVEVLTANIQDLKEEYAKKKETISAANKANEEKLKRLQKSADL |
WRQNKLIQ....DNLLKLIAEVKDKKQEVEVLTANIQDLKEEYAKKKETISA.NKANEE.LKRLQKS.DL | |
Retrocopy | WRQNKLIQXXX>DNLLKLIAEVKDKKQEVEVLTANIQDLKEEYAKKKETISATNKANEERLKRLQKSEDL |
Parental | YKDRLGLEIRKIYGDKLQFIFTNIDPKHPETPYM |
YKDRLGLEIRKIYGDKLQFIFTNIDPKHPE.P.. | |
Retrocopy | YKDRLGLEIRKIYGDKLQFIFTNIDPKHPENPFI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 12 .06 RPM |
SRP012922_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP012922_heart | 0 .00 RPM | 0 .23 RPM |
SRP012922_kidney | 0 .27 RPM | 0 .00 RPM |
SRP012922_liver | 0 .00 RPM | 0 .62 RPM |
SRP012922_lung | 1 .83 RPM | 1 .37 RPM |
SRP012922_quadricep_muscle | 0 .35 RPM | 0 .17 RPM |
SRP012922_spleen | 0 .34 RPM | 17 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013303 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000005926 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004429 | 1 retrocopy |
retro_dnov_826 ,
|
Echinops telfairi | ENSETEG00000015642 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004668 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007753 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012559 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006112 | 1 retrocopy |