RetrogeneDB ID: | retro_chof_2381 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_69972:4629..5632(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRT5 | ||
Ensembl ID: | ENSCHOG00000011913 | ||
Aliases: | None | ||
Description: | keratin 5 [Source:HGNC Symbol;Acc:6442] |
Percent Identity: | 64.83 % |
Parental protein coverage: | 57.38 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | VRFLEQQNKVLDTKWTLLQEQGTKTIRQNLDPLFEQYINNLRRQLDSILGERGRLDAELRNMQDLVEDFK |
V.FLEQQNK.L.TKW.LLQ.Q..KT.....D.LFE.YIN.LRRQ......E...L.AEL.NMQ.LVEDFK | |
Retrocopy | VWFLEQQNKMLETKWSLLQQQ--KTAGSKMDNLFESYINHLRRQHEALSQEKLKLEAELGNMQGLVEDFK |
Parental | NKYEDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKADALMDEINFLKIFFEAELSQMQTHISDTSVVL |
NKYEDEINKRT..ENEFV..KKDVD.AYMNKVELE.....L.DEINFL...FEAE....Q..ISDTS.VL | |
Retrocopy | NKYEDEINKRTEIENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLFEAEIRELQA*ISDTSMVL |
Parental | SMDNNRSLDLDSIIAEVK-AQYED-IANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMI |
SM.N.RSLDLD.IIAEVK.AQYE..IANRSR.EAES.Y..KYEELQ..AG..GDDLR.TK.EISEMNR.I | |
Retrocopy | SMHNSRSLDLDGIIAEVK<AQYEE<IANRSRAEAESMY*IKYEELQTLAGNYGDDLRCTKTEISEMNRSI |
Parental | QRLRAEIDNVKKQCANLQSAIAEAEQRGELALKDARNKLAELEDALQKAKQDMARLLKEYQELMNTKLAL |
.RL.AEI...K.Q.A.L..AIA.AEQRGELA.KDA..KL..LE.AL..AKQDMAR.L.EYQELMN.KLAL | |
Retrocopy | SRLQAEIEGLKGQRASLEAAIADAEQRGELAIKDANAKLGQLEAALHQAKQDMARQLREYQELMNVKLAL |
Parental | DVEIATYRKLLEGEECRLTGEGVGPVNISVVTNSISSAYGGGGGLGGGFGGSVGGPFGGALSGG |
D.EIATYRKLLEGEE.RL.....G..N.S..T...S..Y...G.L...FGG..G.......S.G | |
Retrocopy | DMEIATYRKLLEGEESRLES---GMQNVSIHTKTSSGYY--SGPLSPVFGGLTGTGNNYSFSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003743 | 10 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000011913 | 4 retrocopies | |
Erinaceus europaeus | ENSEEUG00000009412 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007907 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017746 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000004548 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000011707 | 3 retrocopies |