RetrogeneDB ID: retro_chof_2683

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_97019:8112..8446(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSCHOG00000001252
• Aliases: None
• Description: None

Sequence

>retro_chof_2683
GGAAGATACCAGCTAGAGATAAAAATACCAGAAACCTATCCATTTAATCCCCCTAAGGTCCGGTTTATCACTAAAATATG
GCATCCTAATATTAGTTCCGTCACAGGAGCTATTTGTTTGGATATCCTGAAAGATCAATGGGCAGCAGCAATGACTCTGC
GCACGGTATTGTTGTCATTGCAAGCACTATTGGCAGCTGCAGAACCAGATGATCCACAAGATGCAGTAGTAGCAAATCAG
TACAAACAAATCCTGAAATGTTTAACAGACAGCTCGACTTTGGGCACATGTGTACGCTGGAGCACCAGTTTCTAGTCCAG
AATACACCAAAAAA

Alignment

ORF - retro_chof_2683 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.98 %
• Parental protein coverage: 76.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GRYQLEIKIPETYPFNPPKVRFITKIWHPNISSDTGAICLDILXXXXAAAMTLRTVLLSLQALLAAAEPD
          GRYQLEIKIPETYPFNPPKVRFITKIWHPNISS.TGAICLDIL....AAAMTLRTVLLSLQALLAAAEPD
Retrocopy GRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPD

Parental  DPQDAVVANQYKQ-NPEMFK-QTARLWAHVYAGAPVSSPEYTKK
          DPQDAVVANQYKQ.NPEMF..QTARLWAHVYAGAPVSSPEYTKK
Retrocopy DPQDAVVANQYKQ<NPEMFN<QTARLWAHVYAGAPVSSPEYTKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_2683 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001252	1 retrocopy	retro_chof_2683 ,
Otolemur garnettii	ENSOGAG00000008264	1 retrocopy	retro_ogar_2194,
Sorex araneus	ENSSARG00000013725	1 retrocopy	retro_sara_739,
Tursiops truncatus	ENSTTRG00000003174	1 retrocopy	retro_ttru_538,