RetrogeneDB ID: | retro_chof_76 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_1440:16904..17185(+) | ||
Located in intron of: | ENSCHOG00000001932 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAMTOR5 | ||
Ensembl ID: | ENSCHOG00000013405 | ||
Aliases: | None | ||
Description: | late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:HGNC Symbol;Acc:17955] |
Percent Identity: | 70.53 % |
Parental protein coverage: | 61.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | GGMEETLEQH-LEDTMKNPSIVGVLCTDSQGLNLGCRG-TLSDEHAGVISVLAQQAAKLTSDPTDIPVVC |
G.M.ETL.Q..LED.MKN.SI.GVL..DSQGLNLGC.G.TLSD.H.GVISVL.Q...KLTS.PTDIPV.. | |
Retrocopy | GRMAETLVQQ>LEDKMKNLSIIGVLGKDSQGLNLGCHG>TLSDKHVGVISVLVQSTIKLTSVPTDIPVIY |
Parental | LESDNGNIMIQKHDGITVAVHKMAS |
LESDN..IMIQK.DGIT.AV...AS | |
Retrocopy | LESDNVTIMIQKQDGITMAVLQIAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011504 | 2 retrocopies | |
Bos taurus | ENSBTAG00000014970 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000013405 | 3 retrocopies |
retro_chof_2428, retro_chof_76 , retro_chof_910,
|
Macaca mulatta | ENSMMUG00000015023 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000006807 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003401 | 5 retrocopies |