RetrogeneDB ID: | retro_chof_860 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_157053:26..404(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PITPNB | ||
Ensembl ID: | ENSCHOG00000012309 | ||
Aliases: | None | ||
Description: | phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002] |
Percent Identity: | 85.71 % |
Parental protein coverage: | 51.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NTWKTVEIVHIDIADRSQVEPADYKTDEDPALFQSVKTKRGPLGPSWKKELANNPDCPKMCAYKLVTIKF |
NT.KTV.IV.IDIAD.SQVEPA.YK.DEDPALFQSVKT.RGPLG..WKKEL.NNPDCPKMC..K.VTIKF | |
Retrocopy | NT*KTVKIVYIDIADQSQVEPAGYKADEDPALFQSVKT*RGPLGHYWKKELPNNPDCPKMCTCKPVTIKF |
Parental | KWWGLQSKVENFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELET |
KWW.LQ.KVENFIQKQEKRIFTNFH.QLFCWIDKWIDLTMEDIRRM.DET.KELET | |
Retrocopy | KWWRLQNKVENFIQKQEKRIFTNFHGQLFCWIDKWIDLTMEDIRRMQDETHKELET |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012309 | 2 retrocopies |
retro_chof_2374, retro_chof_860 ,
|
Cavia porcellus | ENSCPOG00000012298 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010442 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000511 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000391 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002540 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000000293 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000018546 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001148 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001278 | 2 retrocopies |