RetrogeneDB ID:

retro_ttru_1060

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_101662:35014..35821(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PITPNB
Ensembl ID:ENSTTRG00000001278
Aliases:None
Description:phosphatidylinositol transfer protein, beta [Source:HGNC Symbol;Acc:9002]


Retrocopy-Parental alignment summary:






>retro_ttru_1060
ATGGTGCTGATTAAAGAATTCCGTGTGGTTTTGCCATGTTCGGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTGTTGC
AGAAGCCAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTCTTAAAGAATGAACCTTATGAAAAGGATGGAGAAA
AGGGACAGTATACACACAAAATTTATCACCTGAAGAGCAAAGTCCTTGCATTCGTGAGGATGATTGCTCCCGAGCGCTCC
TTGGTGTTTCACAAGAAAGCCTGGAACGCATACCCCTACTGTAGAACAATTGTAACGAATGAATATATGAAAGATGATTT
CTTCATTAAGATTGAAACATGGCACAAACCAGACTTGGGAACATTAGAAAATGTACACGGTTTAGATCCGAACACATGGA
AAACTGTTGAAGTTGTCCACATAGATATTGCAGATCGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGATGAAGACCCA
GCGTTATTCCAGTCAGTCAAAACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGGCAAGCAACCCTGACTG
TCCTCAGATGTGTGCCTATAAGCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAACTTCATTC
AGAAGCAAGAAAAAAGGATATTTACAAACTTTCATCGCCAGCTTTTTTGTTGGATTGACAAGTGGATTGATCTGACAATG
GAAGATATTAGGAGAATGGAAGATGAAACTCAGAAAGAACTAGAAACAATGCGTAAGAAGGGTTCCATCCGAGGCACGTC
GGCTGCT

ORF - retro_ttru_1060 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.03 %
Parental protein coverage: 98.9 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHKIYHLKSKVPA
MVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHKIYHLKSKV.A
RetrocopyMVLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYEKDGEKGQYTHKIYHLKSKVLA
ParentalFVRMIAPEGSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEVVH
FVRMIAPE.SLVFH.KAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEVVH
RetrocopyFVRMIAPERSLVFHKKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEVVH
ParentalIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELASNPDCPQMCAYKLVTIKFKWWGLQSKVE
IDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELASNPDCPQMCAYKLVTIKFKWWGLQSKVE
RetrocopyIDIADRSQVEPADYKADEDPALFQSVKTKRGPLGPNWKKELASNPDCPQMCAYKLVTIKFKWWGLQSKVE
ParentalNFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETLRNQGQVRGTSAA
NFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELET.R..G..RGTSAA
RetrocopyNFIQKQEKRIFTNFHRQLFCWIDKWIDLTMEDIRRMEDETQKELETMRKKGSIRGTSAA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1060 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1060 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000123092 retrocopies
Cavia porcellus ENSCPOG000000122981 retrocopy
Macropus eugenii ENSMEUG000000104423 retrocopies
Oryctolagus cuniculus ENSOCUG000000005111 retrocopy
Otolemur garnettii ENSOGAG000000003911 retrocopy
Ochotona princeps ENSOPRG000000025401 retrocopy
Tupaia belangeri ENSTBEG000000002931 retrocopy
Takifugu rubripes ENSTRUG000000185461 retrocopy
Tarsius syrichta ENSTSYG000000011481 retrocopy
Tursiops truncatus ENSTTRG00000001278 2 retrocopies
retro_ttru_1060 , retro_ttru_1439,



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