RetrogeneDB ID:

retro_chof_975

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_179351:2191..2524(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UQCRB
Ensembl ID:ENSCHOG00000007884
Aliases:None
Description:ubiquinol-cytochrome c reductase binding protein [Source:HGNC Symbol;Acc:12582]


Retrocopy-Parental alignment summary:






>retro_chof_975
ATGGCAAGCTGGGTTGCTGCGACAGCATCAGGGCAGTGGCTGGATGGTATTCAAAAATGGTATTACAATGCTGCAGGGTT
CGAAAAACTGGGGTTATTGAGAGATGATACAATAGATGAGAATGAAGATATAAAGGAAGCCATAAGAAGGCATCCTGAGA
ACCTTTATAATGACAGGGTATTTCATATTAAGAGAGCACTAGACCTGACCATGAAGCAGCAAATCTTGCCTAAAGAGCAG
TGGACAAAATACAAAGGAGGATAAATTCTATCTTGAACCATAGTGAAAGAAGTTATTAGGGAAAGAAAGGAGAGAAAAGA
ATGGGTAAAGAAA

ORF - retro_chof_975 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.53 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAGRPAVAASGRWLDGIRKWYYNAAGFNKLGLMRDDTISENEDVKEAIRRLPENVYNDRVFRIKRALDLS
MA...A..ASG.WLDGI.KWYYNAAGF.KLGL.RDDTI.ENED.KEAIRR.PEN.YNDRVF.IKRALDL.
RetrocopyMASWVAATASGQWLDGIQKWYYNAAGFEKLGLLRDDTIDENEDIKEAIRRHPENLYNDRVFHIKRALDLT
ParentalMKQQILPKEQWTKY-EEDKFYLEP-YLKEVIRERKEREEWAKK
MKQQILPKEQWTKY..EDKFYLEP...KEVIRERKER.EW.KK
RetrocopyMKQQILPKEQWTKY>KEDKFYLEP<IVKEVIRERKERKEWVKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_975 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 64 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000015213 retrocopies
Choloepus hoffmanni ENSCHOG00000007884 22 retrocopies
Equus caballus ENSECAG000000097801 retrocopy
Latimeria chalumnae ENSLACG000000044651 retrocopy
Loxodonta africana ENSLAFG000000025421 retrocopy
Nomascus leucogenys ENSNLEG000000266701 retrocopy
Pteropus vampyrus ENSPVAG000000123211 retrocopy
Rattus norvegicus ENSRNOG000000249671 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000080171 retrocopy
Tupaia belangeri ENSTBEG0000000245328 retrocopies
Tursiops truncatus ENSTTRG000000073483 retrocopies
Drosophila melanogaster FBgn00307331 retrocopy



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