RetrogeneDB ID:

retro_ttru_1106

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_103134:8268..8583(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UQCRB
Ensembl ID:ENSTTRG00000007348
Aliases:None
Description:ubiquinol-cytochrome c reductase binding protein [Source:HGNC Symbol;Acc:12582]


Retrocopy-Parental alignment summary:






>retro_ttru_1106
CTTGCAGCATCAAGTAAATGGCTGGAGAGTGTTCATAAATGGTATTACAATGTTGTCAGGTTCAGTAAACTGGGCTTAAT
GCGAGATGATACAATATATGTGAATGACAATGTAAAAGAAGCCATAAGAAAGCTTCCTGAGAACATTTATAATGACAGGG
TGTTTAGCATTAAGAGAGCACTGGACCTGACCATGAGGCAGCAGATCTTGCCTAAAGAGCAGTGGACAAAATATGAGGAG
GATAAATTCTACCTTGAACCATATCTGAAAGAGGTTATTCGGGAAAGAAAAGAGAGAGAAGAATGGGCAAAGAAA

ORF - retro_ttru_1106 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.76 %
Parental protein coverage: 94.59 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVAASSKWLEGIRKWYYNAAGFNKLGLMRDDTIYENDDVKEAIKRLPENVYNERVFRIKRALDLTMTQQIL
.AASSKWLE...KWYYN...F.KLGLMRDDTIY.ND.VKEAI..LPEN.YN.RVF.IKRALDLTM.QQIL
RetrocopyLAASSKWLESVHKWYYNVVRFSKLGLMRDDTIYVNDNVKEAIRKLPENIYNDRVFSIKRALDLTMRQQIL
ParentalPKEQWTKYEEDKFYLEPYLKEVIRERKEREEWAKK
PKEQWTKYEEDKFYLEPYLKEVIRERKEREEWAKK
RetrocopyPKEQWTKYEEDKFYLEPYLKEVIRERKEREEWAKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1106 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1106 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 64 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000015213 retrocopies
Choloepus hoffmanni ENSCHOG0000000788422 retrocopies
Equus caballus ENSECAG000000097801 retrocopy
Latimeria chalumnae ENSLACG000000044651 retrocopy
Loxodonta africana ENSLAFG000000025421 retrocopy
Nomascus leucogenys ENSNLEG000000266701 retrocopy
Pteropus vampyrus ENSPVAG000000123211 retrocopy
Rattus norvegicus ENSRNOG000000249671 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000080171 retrocopy
Tupaia belangeri ENSTBEG0000000245328 retrocopies
Tursiops truncatus ENSTTRG00000007348 3 retrocopies
retro_ttru_1106 , retro_ttru_501, retro_ttru_754,
Drosophila melanogaster FBgn00307331 retrocopy



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