RetrogeneDB ID: | retro_cjac_2463 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 4:110694856..110695508(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GSTM1 | ||
Ensembl ID: | ENSCJAG00000003123 | ||
Aliases: | None | ||
Description: | glutathione S-transferase mu 1 [Source:HGNC Symbol;Acc:4632] |
Percent Identity: | 72.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MPMTLGYWDIRGLAHAIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLKEKFKLGLDFPNLPYLIDGAHKI |
MPMTLGY.DI.GLAHAI.LLLEYTDSSY.EKKY.MGDAPDYDRSQWL.EKF.LG.DFPNLPYLIDGAHKI | |
Retrocopy | MPMTLGY*DIHGLAHAICLLLEYTDSSYKEKKYRMGDAPDYDRSQWLNEKFRLGPDFPNLPYLIDGAHKI |
Parental | TQSNAILRYIARKHSLCGETEEEKIRVDILENQTMDTRMQLAMLCYNPEF-EKLKPKYLEELPEKLKLYS |
TQSNAI...IA.KH.LCGETEEEKI..DILENQ.....M.L......P.F.EKLKP.YLE.LP..LKL.S | |
Retrocopy | TQSNAIMHCIACKHNLCGETEEEKIWEDILENQLIYNCM*LTRPA-KPRF>EKLKPEYLEVLPAMLKLHS |
Parental | QFLGKRPWFAGDKITFVDFLAYDVLDQNRIFEPSCLDAFPNLKDFMSRFEGLKKISAYMKSSRFVPGLLF |
Q.LGK.PWF.G.KITFVDF.AYDVL..N..FEP..LDAFPNLKDF..RFEGL.KIS.YMKSS.F.P...F | |
Retrocopy | QSLGKQPWFLGGKITFVDFIAYDVLEGNQLFEPKYLDAFPNLKDFIFRFEGLEKISTYMKSSHFLPRPVF |
Parental | GKSATWNSK |
...A....K | |
Retrocopy | T*MAVGGNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .02 RPM | 24 .03 RPM |
SRP051959_heart | 0 .00 RPM | 18 .65 RPM |
SRP051959_kidney | 0 .02 RPM | 30 .02 RPM |
SRP051959_liver | 0 .00 RPM | 15 .47 RPM |
SRP051959_lung | 0 .00 RPM | 19 .57 RPM |
SRP051959_lymph_node | 0 .00 RPM | 13 .36 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 8 .84 RPM |
SRP051959_spleen | 0 .02 RPM | 22 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3643 |
Pan troglodytes | retro_ptro_2468 |
Gorilla gorilla | retro_ggor_2459 |
Pongo abelii | retro_pabe_2990 |
Macaca mulatta | retro_mmul_1806 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000879 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003123 | 7 retrocopies |
retro_cjac_1299, retro_cjac_2226, retro_cjac_2463 , retro_cjac_2498, retro_cjac_3004, retro_cjac_3084, retro_cjac_811,
|
Callithrix jacchus | ENSCJAG00000003168 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005148 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003194 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001064 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000001061 | 2 retrocopies |