RetrogeneDB ID: | retro_cjac_3538 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01183636.1:6..216(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000036542 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.28 % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | PRLECSGVISAHCNLCLLETGDSPASASRVAGITGVCHHPWLIFVFLVETAFHHVGQAGLKLLTSGDPPT |
PRL.C.GVISAH..LCLL...DS..SAS....ITG...H.WL.F..L.ET.F.HVGQAGLKLLT.GDP.T | |
Retrocopy | PRL*CNGVISAHG*LCLLGSSDSAVSASQAVEITG--YHIWLVFTVLLETGFLHVGQAGLKLLTLGDPLT |
Parental | SA |
SA | |
Retrocopy | SA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .09 RPM | 0 .02 RPM |
SRP051959_heart | 0 .07 RPM | 0 .02 RPM |
SRP051959_kidney | 0 .00 RPM | 0 .00 RPM |
SRP051959_liver | 0 .00 RPM | 0 .00 RPM |
SRP051959_lung | 0 .07 RPM | 0 .03 RPM |
SRP051959_lymph_node | 0 .02 RPM | 0 .02 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 0 .00 RPM |
SRP051959_spleen | 0 .06 RPM | 0 .00 RPM |