RetrogeneDB ID: | retro_cjac_3634 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01190620.1:1695..2079(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000031826 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.61 % |
Parental protein coverage: | 99.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LECNGMISAHCNLQLLGSSDSPASASRVAGTTGVYHHAQLIFIFLVETGFHLVDQDGLDL-LTSDPPTLA |
LE..G.ISAHCNL.L.GSSDS.ASAS.VA...G...HAQLIF..LVE.GF..V.Q.GL.L....DPPT.A | |
Retrocopy | LEYSGVISAHCNLCLPGSSDSSASASQVAKIIGMCYHAQLIFVILVEMGFFHVGQAGLEL>TSDDPPTFA |
Parental | SQSAGITGMALCAPPHRIIFVFLVETGF-HHVGQAGLKLLISGDPPALASQSTGITGVRHRA |
SQSAGITGM.....P......FL...GF..HVGQA.L.LL...DPPA.AS.S.GITGV.H.A | |
Retrocopy | SQSAGITGMSHHTRP--*VLYFLWRWGF<YHVGQADLELLTTTDPPASASKSAGITGVSHWA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 0 .51 RPM |
SRP051959_heart | 0 .00 RPM | 0 .35 RPM |
SRP051959_kidney | 0 .00 RPM | 0 .60 RPM |
SRP051959_liver | 0 .00 RPM | 0 .17 RPM |
SRP051959_lung | 0 .00 RPM | 0 .50 RPM |
SRP051959_lymph_node | 0 .00 RPM | 0 .46 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 0 .28 RPM |
SRP051959_spleen | 0 .00 RPM | 0 .59 RPM |