>retro_cjac_4201
AGATTGAGAACGTGGGAAGCTTCTCAGCAGTCAAATCAAATCCAAACACAACTCACTGCCAGAGCAAAGAGGAAATATTC
AGAGGCTGATGAAACCTACTTTTAGGAGGAGAGAAACCACTAAAGAATGAAACTGGCTTGTCTTCAATTAAAAAACCATT
AAAGGAAGCACACGTAAGGAAGAGAGAGAAAATCCTTTAAAATGGAGTAGAATCGAACTTGATATAGATAGCAATTTGAT
CACATCAACACCAAGAGCAGGAGAGAAATCTAACAAACAGATACCTTGAGTAAGACAGAAAAGTCAAGTAAATGGAGAAG
CTGGTAGTTATCAAAAGACAAATCAATTTATAAAATAAAATGGAAAATTAGAAAATAATCCTTCCTCTGGCAGTTCTCCA
AGGACTACTTTGTAGGGGACCATATTTTCTCTGGTCTTCAACTTTTTTCATCAACAAATAAAAATGGAACATCAGGATCA
GATTCTCCAGGACACACTGTGGAAGCTGAAGAAATGGTAAAATAACTTGATATGGGACAGGTGGATGAGATCACTATCAG
TACTACTACATCAACTAATGGAGCAACTAATGCAAATCAAGCAGTTCAGGTGAAACCATCAATAAACAATAGTTTAGAGG
AAACAGTAATCATGATATCTCACCCCTTACAGCACCAGTAATTCCAGATAGTAGTTATTCATCATCCCATACAGACGCCA
CCTATGAAGAAGGCTGGGAAGTATTTTGCCCCTATTATTTCATCAAACATGTCTCGCCACTGACAGAAGAACAACTAAAT
AGGAAACCTCTTTTGTTGAAAACAGGAAGTACACAGGAATTCTCCCTAGATTTAGATTTGGATGAAACACTAAGTGCACT
GTAGTCTAAATGAGCTAGAAGATGCAGCACTTAATTTTCCAGTCATTTTCCATGATGTCATTTATCAGGTTTATGAGATT
AAGATCATTTTTCAGGGAATTCCTGGAGTAATTTTTCAGATGGATGAGATTATTCTTTTTCCTGCTTTTAAGAAGGTGTA
TGCAGACAAGTTACTGACCAAACTAGACCCTAAAAAGCAAAGGGTCAAGTCCAATTTTTCTGTGATCATTGTGTTTGTAC
AAGGAAAATATATAAAGGACTTAAATATTATTGGAAGAGATCTTTCAAAAACTATAATAATTGACAACTCACCACAAGAC
TTTGCATATTCGCTTTCTAATGGAATCCCTATAGAAAGTTGGTTTATGAATAAAAATGACAATGAACTTCTAAAATTGCT
TTTATTCCTGGAGAAGCTTGTATAACTGAGTGAAGATGTTTGACCACACATCAGACACAGATTTCACTAGCATGATTTGC
TGACCCATGAT
ORF - retro_cjac_4201 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75. % |
Parental protein coverage: |
99.79 % |
Number of stop codons detected: |
7 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | RLRTRKASQQSNQIQTQRTARAKRKYSEVDDS-LPSGGEKPRKNETGLLSSIKK-FIKGSTPKEERENPS |
| RLRT..ASQQSNQIQTQ.TARAKRKYSE.D...L..GGEKP.KNETGL.SSIKK..IKGST.KEERENP. |
Retrocopy | RLRTWEASQQSNQIQTQLTARAKRKYSEADET<LLLGGEKPLKNETGL-SSIKK<TIKGSTRKEERENPL |
|
Parental | KRSRIERDIDNNLITSTPRAGEKPNKQISRVRRKSQVNGEAGSYEMTNQHVKQNGKLEDNPSAGSPPRTT |
| K.SRIE.DID.NLITSTPRAGEK.NKQI..VR.KSQVNGEAGSY..TNQ..K.NGKLE.NPS.GS.PRTT |
Retrocopy | KWSRIELDIDSNLITSTPRAGEKSNKQIP*VRQKSQVNGEAGSYQKTNQFIK*NGKLENNPSSGSSPRTT |
|
Parental | LLGTIFSPVFNFF-SPANKNGTSGSDSPGQAVEAEEIVKQLDMEQVDEITTSTTTSTNGAAYSNQAVQVR |
| L.GTIFS.VFNFF.S..NKNGTSGSDSPG..VEAEE.VK.LDM.QVDEIT.STTTSTNGA...NQAVQV. |
Retrocopy | L*GTIFSLVFNFF<SSTNKNGTSGSDSPGHTVEAEEMVK*LDMGQVDEITISTTTSTNGATNANQAVQVK |
|
Parental | ASINNGLEEAEETV-NRDIPPLTAPVTPDSGYSSAHAEATYEEDWEVFDPYYFIKHVPPLTEEQLNRKPA |
| .SINN.L...EETV.N.DI.PLTAPV.PDS.YSS.H..ATYEE.WEVF.PYYFIKHV.PLTEEQLNRKP. |
Retrocopy | PSINNSL---EETV<NHDISPLTAPVIPDSSYSSSHTDATYEEGWEVFCPYYFIKHVSPLTEEQLNRKPL |
|
Parental | LPLKTRSTPEFSLVLDLDETL-VHCSLNELEDAALTFPVLFQDVIYQVYVRLRPFFREFLERMSQMYEII |
| L.LKT.ST.EFSL.LDLDETL.VHCSLNELEDAAL.FPV.F.DVIYQVY......F........QM.EII |
Retrocopy | L-LKTGSTQEFSLDLDLDETL>VHCSLNELEDAALNFPVIFHDVIYQVY-EIKIIFQGIPGVIFQMDEII |
|
Parental | LFTASKKVYADKLLNILDPKKQLVRH-RLFREHCVCVQGNYIKDL-NILGRDLSKTIIIDNSPQAFAYQL |
| LF.A.KKVYADKLL..LDPKKQ.V.....F..HCVC....Y.K.L.NI.GRDLSKTIIIDNSPQ.FAY.L |
Retrocopy | LFPAFKKVYADKLLTKLDPKKQRVKS<QFFCDHCVCTRKIY-KGL>NIIGRDLSKTIIIDNSPQDFAYSL |
|
Parental | SNGIPIESWFMDKNDNELLKLIPFLEKLVELNEDVRPHIRDRFRLHDLLPPD |
| SNGIPIESWFM.KNDNELLKL..FLEKLV.L.EDV.PHIR.RF..HDLL..D |
Retrocopy | SNGIPIESWFMNKNDNELLKLLLFLEKLV*LSEDV*PHIRHRFH*HDLLTHD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP051959_colon |
0 .00 RPM |
26 .40 RPM |
SRP051959_heart |
0 .00 RPM |
23 .66 RPM |
SRP051959_kidney |
0 .00 RPM |
28 .84 RPM |
SRP051959_liver |
0 .00 RPM |
17 .35 RPM |
SRP051959_lung |
0 .00 RPM |
37 .77 RPM |
SRP051959_lymph_node |
0 .00 RPM |
41 .30 RPM |
SRP051959_skeletal_muscle |
0 .00 RPM |
14 .19 RPM |
SRP051959_spleen |
0 .00 RPM |
38 .07 RPM |
Callithrix jacchus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cjac_4201 retrocopy.
Callithrix jacchus was not studied using FANTOM5 data.
retro_cjac_4201 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cjac_4201 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.