RetrogeneDB ID: | retro_cpor_1209 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_56:6291019..6291716(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BMI1 | ||
Ensembl ID: | ENSCPOG00000015427 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75. % |
Parental protein coverage: | 72.09 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KRRRDFYAAHPSADAANGSNEDRGEVADEEKRIITDDEIISLSIEFFDQNRLDRKVNKDKEKSKEEVNDK |
K.R.DFYA.HPSADAANGS.EDRGE.ADEEKRII.DDEI..LS.E..DQN.LD.KVNK.KEKSKEEVNDK | |
Retrocopy | KGRKDFYAVHPSADAANGSHEDRGEAADEEKRIIIDDEIVCLSMELSDQNSLDQKVNKNKEKSKEEVNDK |
Parental | RYLRCPAAMTVMHLRKFLRSKMDIPNTFQIDVMYEEEPLKDYYTLMDIAYIYTWRRNGPLPLKYRVRPTC |
RYL.CPAAMTV.HLRKFLR.KMDI.NT.Q.DV.YEEEPLK..Y.LMDI...YTWRRNG..PLKYR.RPTC | |
Retrocopy | RYLQCPAAMTVIHLRKFLRGKMDISNTSQHDVTYEEEPLKVHYPLMDI---YTWRRNGSHPLKYRIRPTC |
Parental | K-RMKISHQRDGLTNAGELESDSGSDKANSPAGGIPSTSSCLPSPSTPVQSPHPQFPHISSTMNGTSNSP |
..RMKI.HQR.GL...G.L.SDS.SDKANS..GG..STS..LPS..TPVQ.PHPQ.PHIS.T.N.TSNS. | |
Retrocopy | S>RMKIDHQRYGLVKSGALQSDSESDKANSQPGGFLSTSFSLPSARTPVQDPHPQCPHISNTLNETSNSS |
Parental | SGNHQSSFANRPRKSSVNGSSATSSG |
S.NHQSSFANRP..SSVN..SATSSG | |
Retrocopy | SSNHQSSFANRPH*SSVNELSATSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .80 RPM |
SRP017611_liver | 0 .00 RPM | 12 .45 RPM |
SRP040447_lung | 0 .10 RPM | 23 .96 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 21 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011962 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000036548 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015427 | 2 retrocopies |
retro_cpor_1209 , retro_cpor_546,
|
Gorilla gorilla | ENSGGOG00000025243 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016845 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000881 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026739 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005420 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015631 | 1 retrocopy |