RetrogeneDB ID: | retro_cpor_546 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_19:16954424..16955123(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BMI1 | ||
Ensembl ID: | ENSCPOG00000015427 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.57 % |
Parental protein coverage: | 72.39 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MHRTTRIKITELNPHLMCVL-CGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTR-PLLN |
MH.T.R.K.TEL.P...CVL.CGG.F.DAT.I..C.H.FCK.CIVR.LE.SKYCPICDVQVH.TR...L. | |
Retrocopy | MHGTARVKSTELSPQIVCVL<CGGHFTDATAITGCPHPFCKMCIVRCLESSKYCPICDVQVHNTR<TPLS |
Parental | IRSDKTLQDIVYKLVPGLFKNEMKRRRDFYAAHPSADAANGSNEDRGEVADEEKRIITDDEIISLSIEFF |
IRSDKTL.DI.YKLVPGLFKNEMKRR..FYAAHPSADA..GSNED..E..DE.K.IITD..IISLSIE.F | |
Retrocopy | IRSDKTLKDIMYKLVPGLFKNEMKRRMHFYAAHPSADAS-GSNEDK-EIGDEKKGIITDRGIISLSIELF |
Parental | DQNRLDRKV-NKDKEKSKEEVNDKRYLRCPAAMTVMHLRKFLRSKMDIPNTFQIDVMYEEEPLKDYYTLM |
DQNRLD.KV.NKDK.KSKE.VNDKRYLRCPAA.TVMHLR.FLRSKMD.P.T.Q.DVMY...PLKDY..LM | |
Retrocopy | DQNRLDEKV<NKDKQKSKEVVNDKRYLRCPAALTVMHLREFLRSKMDTPDTLQTDVMYDDKPLKDYDLLM |
Parental | DIAYIYTWRRNGPLPLKYRVRPTCKRMKI |
DIAYIYTWRRNGPL.LKYRVRPTCKR.KI | |
Retrocopy | DIAYIYTWRRNGPLTLKYRVRPTCKRKKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 17 .80 RPM |
SRP017611_liver | 0 .00 RPM | 12 .45 RPM |
SRP040447_lung | 0 .00 RPM | 23 .96 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 21 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011962 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000036548 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000015427 | 2 retrocopies |
retro_cpor_1209, retro_cpor_546 ,
|
Gorilla gorilla | ENSGGOG00000025243 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016845 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000000881 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026739 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005420 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015631 | 1 retrocopy |