RetrogeneDB ID: | retro_cpor_136 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:64495081..64495497(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL10 | ||
Ensembl ID: | ENSCPOG00000001642 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.86 % |
Parental protein coverage: | 56.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ELEQREVLVLGLDG-CGKSTFLRVLSGKTPLEGHVPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWKEF |
ELEQ...LVL.L.G...K.TFL..L.GK.PLE....TW.FNS.RLP..DFEVDL.EIG.S.NL.FY.KE. | |
Retrocopy | ELEQYQLLVLALHG<LRKGTFLSQLLGKPPLEDPISTWSFNSMRLPPEDFEVDLVEIGDS*NLCFYRKES |
Parental | VNEVDVLVFMVDSADRLRLPWARQELHKLLDKDPDLPVVVVANKQDLSEAMSVVELQQELGLQAIDNQRE |
VN.VDV.VFM..SAD.L.LPWA.QELHKLLDKDPDLP...VAN.QDLSEA.SV.ELQQE.GLQ..D.Q.E | |
Retrocopy | VNGVDVFVFMMGSADWLWLPWAGQELHKLLDKDPDLPG*QVANRQDLSEAESVGELQQEVGLQVPDSQPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .15 RPM |
SRP017611_liver | 0 .00 RPM | 0 .96 RPM |
SRP040447_lung | 0 .03 RPM | 2 .72 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 23 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000001642 | 3 retrocopies |
retro_cpor_136 , retro_cpor_1479, retro_cpor_933,
|
Dasypus novemcinctus | ENSDNOG00000002678 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016961 | 1 retrocopy |