RetrogeneDB ID: | retro_cpor_1382 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_79:3090925..3091310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TGIF2-C20orf24 | ||
Ensembl ID: | ENSCPOG00000011435 | ||
Aliases: | None | ||
Description: | TGIF2-C20orf24 readthrough [Source:HGNC Symbol;Acc:44664] |
Percent Identity: | 76.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MSGGRRKEEPSQPQLANGA-PKVSVWSKVLRSDAAWEDKDEF-LDVIYWFRQIIAVVLGVIWGVLPLRGF |
MS.G..KEEP.QPQLA..A.P..SVWSKVL.SD.AWEDKDEF.LDVIYWF.QI.AVV..VIW.V.PLRGF | |
Retrocopy | MSSGG*KEEPCQPQLAIRA<PQISVWSKVLQSDVAWEDKDEF<LDVIYWFQQITAVVVSVIWRVYPLRGF |
Parental | LGIAGFCLINAGVLYLYFS-NYLQIDEEEYGGTWELTKEGFMTS-FALFMVIWIIFYTAIHYD |
LGI.GFCL.NA.VLYLYFS.N.LQIDEEEYG.T.E.TKE.FMTS.F.LF.VIWIIFYTA.HYD | |
Retrocopy | LGIPGFCLLNAEVLYLYFS>NCLQIDEEEYGSTQEFTKEEFMTS<FCLFVVIWIIFYTATHYD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .49 RPM |
SRP017611_liver | 0 .00 RPM | 51 .41 RPM |
SRP040447_lung | 0 .00 RPM | 24 .39 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .64 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021805 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011435 | 2 retrocopies |
retro_cpor_1090, retro_cpor_1382 ,
|
Mustela putorius furo | ENSMPUG00000017777 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020317 | 1 retrocopy |