RetrogeneDB ID: | retro_cpor_235 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_105:3131226..3131694(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EAF2 | ||
Ensembl ID: | ENSCPOG00000006427 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.88 % |
Parental protein coverage: | 61.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EKLSSNITVKKTRVEGSTKVHHNMEQQQPQHMRNSSKTPDFAKHSPPEDKMSPTSLMDDIERELKAEASL |
E..S..I......VEGS.KVHHN.EQQ..QH..NSSKTP.F.K.SPPEDKMSPTSLMD.IERELKA..S. | |
Retrocopy | EQDSRTISHHFWKVEGSSKVHHNVEQQRQQHIQNSSKTPSFVKQSPPEDKMSPTSLMDGIERELKAQMS- |
Parental | MDQMSSCDSSSDSTSSSS-SSSEDSSSDSDDEEGR-SSTPRSCVSGHPTMS-DISQYRISDTATGH-NRF |
....SS.DS.S.S.SSS...SS.DS....DDEEGR.SSTPR.CVSGHPTMS..I.QYRISDTA.GH...F | |
Retrocopy | -SCVSSSDSTSSSSSSSG<DSSSDS----DDEEGRSSSTPRDCVSGHPTMS<QIPQYRISDTAAGH<YQF |
Parental | PDNSAILMNTLRNDLQLSDSGSDSDD |
.DNS.ILMNTLRNDLQLSDSGSDSDD | |
Retrocopy | HDNSSILMNTLRNDLQLSDSGSDSDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .17 RPM |
SRP017611_kidney | 0 .00 RPM | 3 .25 RPM |
SRP017611_liver | 0 .00 RPM | 0 .09 RPM |
SRP040447_lung | 0 .00 RPM | 2 .50 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000006427 | 1 retrocopy |
retro_cpor_235 ,
|
Felis catus | ENSFCAG00000018226 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005416 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018271 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017542 | 1 retrocopy |